View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1405_low_6 (Length: 290)
Name: NF1405_low_6
Description: NF1405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1405_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 34904883 - 34905037
Alignment:
| Q |
65 |
ctggctgggatgaagcgccaaaaggtgtaaatatgctgcttccgaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgagt |
164 |
Q |
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| T |
34904883 |
ctggctgggatgaagcgccaaaaggtgttaatatgctgcttccaaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgggt |
34904982 |
T |
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| Q |
165 |
ggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagca |
219 |
Q |
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| T |
34904983 |
ggcacttccaaatggacttgtttgagtaggattagagccaaaacctccaaaagca |
34905037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 34896187 - 34896313
Alignment:
| Q |
93 |
aaatatgctgcttccgaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgagtggcacttccaaatggacttgtttgagta |
192 |
Q |
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| T |
34896187 |
aaatatgctgcttccaaatgctggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgggtggcacttccaaatggacttgtttgagta |
34896286 |
T |
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| Q |
193 |
ggagtagagccaaaacctccaaaagca |
219 |
Q |
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| T |
34896287 |
ggagtagagccaaaacctccaaaagca |
34896313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 28545778 - 28545691
Alignment:
| Q |
132 |
gttacttccaaatgctggttgtgatggttgagtggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagca |
219 |
Q |
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| T |
28545778 |
gttacttccaaatgctggtcgtgatggttggatggcacttctacatggacttgtttgagtaggagtagagccaaaacctacaaaagca |
28545691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 28543544 - 28543458
Alignment:
| Q |
131 |
tgttacttccaaatgctggttgtgatggttgagtggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaag |
217 |
Q |
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| T |
28543544 |
tgttgcttccaaatactggttgtgatggttgtatggcacatccaaaaggacttatctgagtaggcatcgagccaaaacctccaaaag |
28543458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 34910064 - 34910112
Alignment:
| Q |
171 |
tccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagca |
219 |
Q |
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| T |
34910064 |
tccaaaaggacttatttgagtaggtgtatagccaaaacctccaaaagca |
34910112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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