View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_high_1 (Length: 743)
Name: NF14060_high_1
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 4 - 514
Target Start/End: Original strand, 43910922 - 43911435
Alignment:
| Q |
4 |
gagatgaacgaacctgggaatttaggagtgaaacggttagacttgagggggtcagtgaaaaaagcagacttaagttcagctggagaagacaaattcagag |
103 |
Q |
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|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
43910922 |
gagaagaaagaacctgggaatttaggagtgaagcggttagacttgagggggtcagtgaaaaaaccagacttaagttcagctggagaatacaaattcagag |
43911021 |
T |
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| Q |
104 |
ccatcaaaaaggttgatgttgtagcttgnnnnnnnnnnnnccaaagagattgcagtgttcttatgtaacaagatgtggtgggttagagtttttaataata |
203 |
Q |
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| T |
43911022 |
ccatcaaaaaggttgatgttgtagcttgaacaataaaaaaccaaagagagtgcagtgttcttatgtaacaagatgtggtgggttagagtttttaataata |
43911121 |
T |
|
| Q |
204 |
atatttgtagccgagacaagaatccacaatggatgtggtttcgtacagcatcaacaacagggtattattgttaattaattatttttgaaagagaggtaag |
303 |
Q |
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| T |
43911122 |
atatttgtagccgagacaagaatccacaatggatgtggtttcggacagcatcaacaacagggtattattgttaattaattatttttgaaagagaggtaag |
43911221 |
T |
|
| Q |
304 |
ggaaatggaaagtgggtaatatagaaatagattagaatgaggacgaaatagagagtatggacgagggtccaacttgtggaatcatcgttggttcacttat |
403 |
Q |
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| T |
43911222 |
ggaaatggaaagtgggtaatatagaaatagattagaatgaggacgaaatagagagtatggacgagggtccaacttgtggaatcatcgttggttcacttat |
43911321 |
T |
|
| Q |
404 |
catatattctcttttagtttcaaac----tagatacttttgttt----agttattcactttcatgtgattatgtgaagtgaaactcactcaattacatca |
495 |
Q |
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| T |
43911322 |
catatattctcttttagtttcaaactagatagatacttttgtttagtaagttattcactttcatgtgattat-----gtgaaactcactcaattacatca |
43911416 |
T |
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| Q |
496 |
cacaaccattttttacatt |
514 |
Q |
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||||||||||||||||||| |
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| T |
43911417 |
cacaaccattttttacatt |
43911435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 516 - 728
Target Start/End: Original strand, 43911507 - 43911719
Alignment:
| Q |
516 |
gaattgtgagttcaatcctaagcatctctatgagttttttactatatgaattatatcattaaccacatattatctgataaaataaaatcattttctttaa |
615 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
43911507 |
gaattgtgagttcaatcctaagcatttctatgagttttttactatatgaattatatcattaactacatattatctgataaaataaaatcatcttctttaa |
43911606 |
T |
|
| Q |
616 |
ttcaaaagtcgtctttaaacagtcttgtttgtatttatttttatgagtcttttactaattttatattgaaattggattctctccttcaaatacttctctt |
715 |
Q |
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| T |
43911607 |
ttcaaaagttatctttaaacagtcttgtttgtatttatttttaggagtcttttactaattttatattgaaattggattctctccttcaaatacttctctt |
43911706 |
T |
|
| Q |
716 |
ccactatctaatt |
728 |
Q |
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||||||||||||| |
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| T |
43911707 |
ccactatctaatt |
43911719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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