View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14060_high_14 (Length: 485)
Name: NF14060_high_14
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 12 - 472
Target Start/End: Original strand, 43908712 - 43909172
Alignment:
| Q |
12 |
atgaagaaaacagttgaagctctacctgctgaaaagccgaaaccaagatcagtgagaaggagacctctaaaaccaccacctgttgaaaacacagttaaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43908712 |
atgaagaaaacagttgaagctctacctgctgaaaagccgaaaccaagatcagtgagaaggagacctctaaaaccaccacctgttgaaaacacagttaaag |
43908811 |
T |
|
| Q |
112 |
atttttctgaaacaggtggtgcattggatgaagaaatgatattagatggacttttaatgcgatacgttaagaaacaaactcctaatgaacctggcatggg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43908812 |
atttttctgaaacaggtggtgcattggatgaagaaatgatattagatggacttttaatgcgatacgttaacaaacaaactcctaatgaacctggcatggg |
43908911 |
T |
|
| Q |
212 |
aaaagaacatgtaaaggatcaaaatagaaggtatgaaaaatcaagttcacctgttgctaaaacttggagaagaaaatctcttcctcaaagagaatcaagt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43908912 |
aaaagaacatgtaaaggatcaaaatagaaggtatgaaaaatcaagttcacctgttgctaaaacttggagaagaaaatctcttcctcaaagagaatcaagt |
43909011 |
T |
|
| Q |
312 |
aggatggatacattacaagcaaatgatagagctacttccttagtacctgaaatgatgaggacaacaaccacagggcatgtgcatcctagtctaccagatt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43909012 |
aggatggatacattacaagcaaatgatagagctacttccttagtacctgaaatgatgaggacaacaaccacagggcatgtgcatcctagtctaccagatt |
43909111 |
T |
|
| Q |
412 |
atgaggacttgtcggatcgtctagcatctctcagaagaacataatgccctatgatattttt |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43909112 |
atgaggacttgtcggatcgtctagcatctctcagaagaacataatgccctatgatattttt |
43909172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University