View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14060_high_2 (Length: 653)

Name: NF14060_high_2
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14060_high_2
NF14060_high_2
[»] chr4 (6 HSPs)
chr4 (36-636)||(21513291-21513891)
chr4 (403-627)||(30948806-30949030)
chr4 (403-627)||(42267373-42267597)
chr4 (403-627)||(48700444-48700668)
chr4 (62-120)||(6825034-6825092)
chr4 (403-447)||(2000535-2000579)
[»] chr8 (2 HSPs)
chr8 (62-373)||(26947504-26947815)
chr8 (403-627)||(9442715-9442939)
[»] chr2 (2 HSPs)
chr2 (403-627)||(826949-827173)
chr2 (425-484)||(13842489-13842548)
[»] chr6 (1 HSPs)
chr6 (403-627)||(27877332-27877556)
[»] chr5 (2 HSPs)
chr5 (403-627)||(41719880-41720104)
chr5 (403-627)||(34353480-34353704)
[»] chr3 (2 HSPs)
chr3 (403-627)||(5821898-5822122)
chr3 (403-627)||(2815886-2816110)
[»] chr7 (1 HSPs)
chr7 (403-627)||(8137082-8137306)
[»] scaffold0373 (1 HSPs)
scaffold0373 (62-120)||(15181-15239)
[»] chr1 (1 HSPs)
chr1 (40-72)||(8989466-8989498)


Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 36 - 636
Target Start/End: Original strand, 21513291 - 21513891
Alignment:
Q  36 tctactagaaatttgtagcatttttcaacactcctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaatcttgctctacccgaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513291 tctactagaaatttgtagcatttttcaacactcctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaatcttgctctacccgaa 21513390  T
Q  136 tcctcgattgatgaaatgccgatcaattcttgtgtaccatgctcgaagatttttcttatgcccattcaaagattttcatagtgttagttcttttcctcca 235  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21513391 tcctcgattgatgaaatgccaatcaattcttgtgtaccatgctcgaagatttttcttatgcccattcagagattttcatagtgttagttcttttcctcca 21513490  T
Q  236 ttgcctttggcacacagttctggttttgacgccactgcatagtttttaggctcatgtttggccatgttgcaagtttcatatatatccaccaatgatctta 335  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513491 ttgcctttggcacatagttctggttttgacgccactgcatagtttttaggctcatgtttggccatgttgcaagtttcatatatatccaccaatgatctta 21513590  T
Q  336 ctcttgttggagtagattctggagaagaagtttcttgtcggagaatattctaaaatttacctcctgaaagcatgtataaattacttgtcatcttttctgc 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513591 ctcttgttggagtagattctggagaagaagtttcttgtcggagaatattctaaaatttacctcctgaaagcatgtataaattacttgtcatcttttctgc 21513690  T
Q  436 tttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcgagttgacccaatttttctagggacaataaattc 535  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| | ||| ||||||||||||    
T  21513691 ttttatcaccacaagattatctttcaccacttttaagattccactttcatcatggatcttgcattagagttgacccaatttctttagcgacaataaattc 21513790  T
Q  536 tttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatgtaatagtgacgactccaacaatttcaacagtat 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513791 tttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatgtaatagtgacgactccaacaatttcaacagtat 21513890  T
Q  636 a 636  Q
    |    
T  21513891 a 21513891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 627
Target Start/End: Original strand, 30948806 - 30949030
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  30948806 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcactgtggatcttacacccg 30948905  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  30948906 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 30949005  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  30949006 tgatagtaccgactccagcaatttc 30949030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 627
Target Start/End: Complemental strand, 42267597 - 42267373
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  42267597 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 42267498  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  42267497 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttcgaacagtaccatcatgcatctttaatc 42267398  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  42267397 tgatagtaccgactccagcaatttc 42267373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 627
Target Start/End: Original strand, 48700444 - 48700668
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  48700444 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 48700543  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  48700544 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 48700643  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  48700644 tgatagtaccgactccagcaatttc 48700668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 6825092 - 6825034
Alignment:
Q  62 aacactcctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaat 120  Q
    |||||||||||||||| || ||||   |||||||||||||||||||| |||||||||||    
T  6825092 aacactcctccttgatgcatatttcagtaactccaagcatagttcgtagtagctcaaat 6825034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 2000579 - 2000535
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccac 447  Q
    ||||||||||| |||| |||| | |||||||||||||||||||||    
T  2000579 aagcatgtatagattatttgtgagcttttctgctttcatcaccac 2000535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 7e-97; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 62 - 373
Target Start/End: Original strand, 26947504 - 26947815
Alignment:
Q  62 aacactcctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaatcttgctctacccgaatcctcgattgatgaaatgccgatcaa 161  Q
    |||||||||||||||| || |||| | |||||||||||||| ||||| ||||||||||||||| |||| || |||||||||||||| |||||  ||||||    
T  26947504 aacactcctccttgatgcatatttcggtaactccaagcataattcgtagtagctcaaatcttgatctagccaaatcctcgattgataaaatgttgatcaa 26947603  T
Q  162 ttcttgtgtaccatgctcgaagatttttcttatgcccattcaaagattttcatagtgttagttcttttcctccattgcctttggcacacagttctggttt 261  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||||||||| |||| || | |||||||||||||||||||||||||| | |||||||||    
T  26947604 ttcttgtgtaccatgctcgaggatgtttattatgcccattcaaagattttcttagtcttggatcttttcctccattgcctttggcacataattctggttt 26947703  T
Q  262 tgacgccactgcatagtttttaggctcatgtttggccatgttgcaagtttcatatatatccaccaatgatcttactcttgttggagtagattctggagaa 361  Q
    |||| ||||| |||||||   |||||||||||| |||| |||||||||||||||||||||||||| |||||  ||||||||||||||||||| | |||||    
T  26947704 tgacaccacttcatagttgacaggctcatgtttagccaagttgcaagtttcatatatatccaccagtgatcccactcttgttggagtagattttagagaa 26947803  T
Q  362 gaagtttcttgt 373  Q
    ||||||||||||    
T  26947804 gaagtttcttgt 26947815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 627
Target Start/End: Original strand, 9442715 - 9442939
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  9442715 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 9442814  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  9442815 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttcgaacagtaccatcatgcatctttaatc 9442914  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  9442915 tgatagtaccgactccagcaatttc 9442939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 403 - 627
Target Start/End: Complemental strand, 827173 - 826949
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  827173 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattacctttcactactttcaagattccactttcagtgtggatcttacacccg 827074  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  827073 aggtcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 826974  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  826973 tgatagtaccgactccagcaatttc 826949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 484
Target Start/End: Original strand, 13842489 - 13842548
Alignment:
Q  425 atcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttca 484  Q
    ||||||| |||||||||||||| ||||||  ||||||| ||||||||||| |||||||||    
T  13842489 atcttttttgctttcatcaccagaagatttcctttcactactttcaagatgccactttca 13842548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 627
Target Start/End: Original strand, 27877332 - 27877556
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  27877332 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 27877431  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  27877432 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttcgaacagtaccatcatgcatctttaatc 27877531  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  27877532 tgatagtaccgactccagcaatttc 27877556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 627
Target Start/End: Complemental strand, 41720104 - 41719880
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  41720104 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 41720005  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  41720004 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 41719905  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  41719904 tgatagtaccgactccagcaatttc 41719880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 403 - 627
Target Start/End: Complemental strand, 34353704 - 34353480
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  34353704 aagcatgtatagattacttgtgatcttttctgcttttatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 34353605  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | || | |||||||||| |||||||||     
T  34353604 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaagagtaccatcatgcatctttaatc 34353505  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  34353504 tgatagtaccgactccagcaatttc 34353480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 627
Target Start/End: Original strand, 5821898 - 5822122
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||   |||||||| ||| ||    
T  5821898 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcctttcactactttcaagattccactttcagtgtggatcttacacccg 5821997  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| | |||| |||||||||| |||||||||     
T  5821998 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttctaacagtaccatcatgcatctttaatc 5822097  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  5822098 tgatagtaccgactccagcaatttc 5822122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 403 - 627
Target Start/End: Original strand, 2815886 - 2816110
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||   |||||| ||||| |||||||||||||||   |||||||| ||| ||    
T  2815886 aagcatgtatagattacttgtgatcttttctgctttcatcaccacaagattgcttttcactactttaaagattccactttcagtgtggatcttacacccg 2815985  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || ||||| ||||||||||  || || |||||||| |||||| ||| |||||| |||||||||     
T  2815986 agatcatccaattgtccaacagacaataaattcttcttcaacccctttacatgacgcactccttgtatttttcaaacagtacaatcatgcatctttaatc 2816085  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  |||||||| |||||||    
T  2816086 tgatagtaccgactccagcaatttc 2816110  T

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Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 403 - 627
Target Start/End: Original strand, 8137082 - 8137306
Alignment:
Q  403 aagcatgtataaattacttgtcatcttttctgctttcatcaccacaagattatctttcaccactttcaagattccactttcatcatggatcttgcactcg 502  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||||   |||||| |||||||||||||||||||||   |||||||| ||| ||    
T  8137082 aagcatgtatagattacttgtgatattttcttctttcatcaccacaagattgcatttcactactttcaagattccactttcagtgtggatcttacacccg 8137181  T
Q  503 agttgacccaatttttctagggacaataaattctttttgaacccatttacatgacttaccccatgtattttgcaaacaataccatcatgtatctttaatg 602  Q
    || | | |||||| | | |  |||||||||||||| || |||||||||| ||||  ||| || |||||||| | |||| |||||||||| |||||||||     
T  8137182 agatcatccaattgtccaacagacaataaattcttcttcaacccatttagatgatgtactccttgtatttttcgaacagtaccatcatgcatctttaatc 8137281  T
Q  603 taatagtgacgactccaacaatttc 627  Q
    | |||||  ||||| || |||||||    
T  8137282 tgatagtaccgacttcagcaatttc 8137306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 15181 - 15239
Alignment:
Q  62 aacactcctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaat 120  Q
    |||||||||||||||| || ||||   |||||||||||||||||||| |||||||||||    
T  15181 aacactcctccttgatgcatatttcagtaactccaagcatagttcgtagtagctcaaat 15239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 8989498 - 8989466
Alignment:
Q  40 ctagaaatttgtagcatttttcaacactcctcc 72  Q
    ||||||||||||||||| |||||||||||||||    
T  8989498 ctagaaatttgtagcatatttcaacactcctcc 8989466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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