View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_high_21 (Length: 382)
Name: NF14060_high_21
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 10162110 - 10162467
Alignment:
| Q |
9 |
agcatagggcagtgggacccttcaaccctctaagcattgatcaggagaagaaagattcaaagggtaggcactcatgcatggaatggcttgataaacaaga |
108 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162110 |
agcattgggcagtgggacccttcaaccctctaaccattgatcaggagaagaaagattcaaagggtaggcactcatgcatggaatggcttgataaacaaga |
10162209 |
T |
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| Q |
109 |
aacaaactcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactggattgaaacaaagcaagataaag |
208 |
Q |
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| T |
10162210 |
aacaaactcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactggattgaaacaaagcaagataaag |
10162309 |
T |
|
| Q |
209 |
tttatttgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggtgaactttcgaaagggtttgaagagagagttgaag |
308 |
Q |
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| T |
10162310 |
tttatttgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggtgaactttcaaaagggtttgaagagagagttgaag |
10162409 |
T |
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| Q |
309 |
gaatgggctttgttgtgagggattgggcaccccagttggaaattctaagccacccttc |
366 |
Q |
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| T |
10162410 |
gaatgggctttgttgtgagggattgggcaccccagttggaaattctaagccacccttc |
10162467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 1609111 - 1609465
Alignment:
| Q |
9 |
agcatagggcagtgggacccttcaaccctctaagcattgatcaggagaagaaagattcaaagggtaggcactcatgcatggaatggcttgataaacaaga |
108 |
Q |
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| T |
1609111 |
agcattgggcagttggacccttcaaccctcttaccattga---gaagaagaaagattcaaagggtaggcacttatgtatggaatggcttgataaacaaga |
1609207 |
T |
|
| Q |
109 |
aacaaactcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactggattgaaacaaagcaagataaag |
208 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
1609208 |
accaaactcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactgggttggaacaaagcaagataaag |
1609307 |
T |
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| Q |
209 |
tttatttgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggtgaactttcgaaagggtttgaagagagagttgaag |
308 |
Q |
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| T |
1609308 |
ttcatttgggtgttgagagatgctgataaaggagacatatttgatggaaatgaagggaaaagaggtgaacttgcaaaagggtttgaagagagagttgaag |
1609407 |
T |
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| Q |
309 |
gaatgggctttgttgtgagggattgggcaccccagttggaaattctaagccacccttc |
366 |
Q |
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| T |
1609408 |
gaatggggtttgttgtgagggattgggcaccccagttggaaattctaagccacccttc |
1609465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 37721664 - 37721784
Alignment:
| Q |
116 |
tcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactggattgaaacaaagcaagataaagtttattt |
215 |
Q |
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||||| || ||| |||||||||| || |||||| |||| | ||| ||| ||||| | || |||||| ||| ||| ||||||| ||| ||| ||||||| |
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| T |
37721664 |
tcagtaatttatatatcttttgggaccacaacagccttaaaagaggaacaaattatagagcttgcaaatgggttggaacaaagtaagcaaaaatttattt |
37721763 |
T |
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| Q |
216 |
gggtgttgagagatgctgata |
236 |
Q |
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|||| || ||||||||||||| |
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| T |
37721764 |
gggtattaagagatgctgata |
37721784 |
T |
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