View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_high_24 (Length: 308)
Name: NF14060_high_24
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 145 - 296
Target Start/End: Original strand, 46776210 - 46776361
Alignment:
| Q |
145 |
aacaagtatccctgtgtgcaattgcaaaaattaattttatcatctacatacaactgtaaagataaattattcgagtcggacataaccgagaatagtttca |
244 |
Q |
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| T |
46776210 |
aacaagtatccctgcgtgcaattacaaaaattaattttatcatctacgtacaactgtaaagataaattattcgagtcggatataaccaagaatagtttta |
46776309 |
T |
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| Q |
245 |
ttattttggtgtttcaatgtttccaaaccacctagttttctcttcaaaccta |
296 |
Q |
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| T |
46776310 |
ttattttggtgtttcaatgtttccaaaccacctagttttctcttcaaaccta |
46776361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 46776081 - 46776134
Alignment:
| Q |
19 |
aattaaccatccacgattttgcagaattatttataaactattcacgcaattctg |
72 |
Q |
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| T |
46776081 |
aattaaccattcacgattttgcagaattatttataaactattcacgcaattctg |
46776134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 5151817 - 5151870
Alignment:
| Q |
243 |
cattattttggtgtttcaatgtttccaaaccacctagttttctcttcaaaccta |
296 |
Q |
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| T |
5151817 |
cattattttggtgtttcaaagttttcaaaccatcaagttttttcttaaaaccta |
5151870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 5152401 - 5152349
Alignment:
| Q |
245 |
ttattttggtgtttcaatgtttccaaaccacctagttttctcttcaaacctat |
297 |
Q |
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| T |
5152401 |
ttatattggtgtttcaaagtttccaaaccacctcatttactctccaaacctat |
5152349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 3917373 - 3917340
Alignment:
| Q |
242 |
tcattattttggtgtttcaatgtttccaaaccac |
275 |
Q |
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| T |
3917373 |
tcattattttggtgtttcaaagtttccaaaccac |
3917340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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