View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_high_25 (Length: 272)
Name: NF14060_high_25
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 24948846 - 24948604
Alignment:
| Q |
13 |
ataatactatttgagacttttcataacaacatataagttttgttacttttcatataattatttatcttttttctatgatacatttaaccatttataatct |
112 |
Q |
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| T |
24948846 |
ataatactatttgagacttttcataacaacatataagttttgttacttttcatatgattatttatcttttttctatgatacatttaatcatttataatct |
24948747 |
T |
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| Q |
113 |
tatttcatctacttttctctcttaaaaaataactaagggtattattgacaaaataacgatcaatatttcattaaactttaaaaatgacaactaaatatga |
212 |
Q |
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| T |
24948746 |
tatttcatctacttttctctcttaaaaaataactaagggtattattgacaaaataacaattaatgtttcattgaactttaaaaatgacaactaaatatga |
24948647 |
T |
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| Q |
213 |
acaaaactttcttgcaaacacaacaattaaaaaggaaaagaag |
255 |
Q |
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| T |
24948646 |
acaaaactttcttgcaaacacaacaattaaaaaggaaaagaag |
24948604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 3036518 - 3036413
Alignment:
| Q |
109 |
atcttatttcatctacttttctctct-taaaaaataactaagggtattattgacaaaataacgatcaatatttcattaaactttaaaaatgacaactaaa |
207 |
Q |
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| T |
3036518 |
atcttatttcatata--tttctctctataataaattactaagggtaatatcggtaaaataacatttaatattacattaaactttgaaagtgacaattaaa |
3036421 |
T |
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| Q |
208 |
tatgaaca |
215 |
Q |
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||| |||| |
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| T |
3036420 |
tataaaca |
3036413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 41480631 - 41480710
Alignment:
| Q |
139 |
aaataactaagggtattattgacaaaataacgatcaatatttcattaaactttaaaaatgacaactaaatatgaacaaaa |
218 |
Q |
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| T |
41480631 |
aaataactaagggtattattgacaaaacaatagttaatattgcattgaactttcaaaatgacaacttaataggaacaaaa |
41480710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 19603529 - 19603590
Alignment:
| Q |
141 |
ataactaagggtattattgacaaaataacgatcaatatttcattaaactttaaaaatgacaa |
202 |
Q |
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| T |
19603529 |
ataaataagggcattattgacaaaataataattaatattatattaaactttaaaaacgacaa |
19603590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 46750568 - 46750479
Alignment:
| Q |
45 |
ataagttttgttacttttcatataattatttatcttttttctatgatacatttaaccatttataatcttatttcatctacttttctctct |
134 |
Q |
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|||| |||| |||||||| ||| ||||||||||||||| | ||| |||| ||||| |||||| || |||||| ||||| |||| ||||| |
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| T |
46750568 |
ataaattttattacttttaatacaattatttatcttttatatataatacttttaatcatttaatattttattttatctatttttttctct |
46750479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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