View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_high_29 (Length: 238)
Name: NF14060_high_29
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 45646002 - 45646212
Alignment:
| Q |
11 |
ataatacttatgcggaactgatggcattgttttttggtctgaagcttgttaataatatcggttgcaatcgagtttgttcctattaagaatcgaaaactat |
110 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45646002 |
ataatacttatgcggaactgatggcattgtttcttggtctgaagcttgttaataatatcggttgcaatcaagtttgttcctattaagaatcgaaaactat |
45646101 |
T |
|
| Q |
111 |
caatgatattgtaactaagccagttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggagatgtagtta |
210 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45646102 |
taatgatattgttactaagccagttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggagatgtagtta |
45646201 |
T |
|
| Q |
211 |
tgccactcttt |
221 |
Q |
| |
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|| |||||||| |
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| T |
45646202 |
tgtcactcttt |
45646212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 34721349 - 34721534
Alignment:
| Q |
34 |
gcattgttttttggtctgaagcttgttaataatatcggttgcaatcgagtttgttcctattaagaatcgaaaactatcaatgatattgtaactaagccag |
133 |
Q |
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||||||||||||||| ||||||||| ||||||||| |||||||||| |||||||| ||||| ||| ||||||||||| | ||||||||| ||||| | |
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| T |
34721349 |
gcattgttttttggtttgaagcttgctaataatatgggttgcaatcaagtttgttgctattcagactcgaaaactattattgatattgtttctaagacga |
34721448 |
T |
|
| Q |
134 |
ttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggagatgtagttatgccactct |
219 |
Q |
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||||||||||| |||| ||||||| |||| |||||| |||||| || || | ||||||||||||||| || |||||||||||||| |
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| T |
34721449 |
ttaacaagtactattgctatgcttctgtcgttgcttgtgttcaagatttttttagaatggattgggaggtgcagttatgccactct |
34721534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 51300777 - 51300570
Alignment:
| Q |
11 |
ataatacttatgcggaactgatggcattgttttttggtctgaagcttgttaataatatcggttgcaatcgagtttgttcctattaagaatcgaaaactat |
110 |
Q |
| |
|
||||||||| | ||||||| ||| |||||||| |||||||||||||| ||||||| |||||||||| | |||||| ||| ||| ||||||| ||| |
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| T |
51300777 |
ataatactttttcggaacttatgacattgtttattggtctgaagcttt---ataatatgggttgcaatcaaatttgttgttatccagactcgaaaattat |
51300681 |
T |
|
| Q |
111 |
caatgatattgtaactaagccagttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggagatgtagtta |
210 |
Q |
| |
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| ||||||||| ||||| | |||||||||||||||||||||| ||||| |||||||| |||||| |||||| | |||||| |||||||| || ||||| |
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| T |
51300680 |
tattgatattgttactaaatcggttaacaagtaccattgttatggttttggcattgcttgtgttcaagagttattgagaatgaattgggaggtgcagtta |
51300581 |
T |
|
| Q |
211 |
tgccactcttt |
221 |
Q |
| |
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|| |||||||| |
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|
| T |
51300580 |
tgtcactcttt |
51300570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 19998270 - 19998477
Alignment:
| Q |
11 |
ataatacttatgcggaactgatggcattgttttttggtctgaagcttgttaataatatcggttgcaatcgagtttgttcctattaagaatcgaaaactat |
110 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || ||||||||||| ||| ||||| |||||||||| | |||||| | ||| ||| || |||||||| |
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| T |
19998270 |
ataatacttatgcggagcttatggcattgtttctttttctgaagcttgctaagaatattggttgcaatcaaatttgttgccattcagactcaaaaactat |
19998369 |
T |
|
| Q |
111 |
caatgatattgtaactaagccagttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggagatgtagtta |
210 |
Q |
| |
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| ||||||||| |||||||||||||||||||||||||| ||||||| | ||||| ||| |||||| ||||| | ||||||||||| ||| || ||||| |
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| T |
19998370 |
tattgatattgttactaagccagttaacaagtaccattgctatgcttctatcattacttgtgttcaaaagttattgagaatggattgagag-tgcagtta |
19998468 |
T |
|
| Q |
211 |
tgccactct |
219 |
Q |
| |
|
|| |||||| |
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|
| T |
19998469 |
tgtcactct |
19998477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 1515214 - 1515014
Alignment:
| Q |
12 |
taatacttatgcggaactgatggcattgttttttggtctgaagcttgttaataatatcggttgcaatcgagtttgttcctattaagaatcgaaaactatc |
111 |
Q |
| |
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|||||||||||| ||||| | ||| |||||| || || |||| ||| || ||||| |||||||||| |||||||||||| | |||||||||| |
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| T |
1515214 |
taatacttatgcagaacttacggctttgtttctttatcagaagattgccaagaatattggttgcaatcatatttgttcctattcgaactcgaaaactact |
1515115 |
T |
|
| Q |
112 |
aatgatattgtaactaagccagttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggagatgtagttat |
211 |
Q |
| |
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| |||||||| |||||||| |||||||||| ||| | ||||| |||||||||||||| || | |||||| ||||||||||| ||||| || |||||| |
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| T |
1515114 |
attgatattgctactaagcctgttaacaagtgccactattatgtttttgtcattgcttctgcaaaagagttattaagaatggatggggaggtgcagttat |
1515015 |
T |
|
| Q |
212 |
g |
212 |
Q |
| |
|
| |
|
|
| T |
1515014 |
g |
1515014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 26143836 - 26143923
Alignment:
| Q |
114 |
tgatattgtaactaagccagttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggag |
201 |
Q |
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||||||||| |||||| | |||||||||||||| | |||| | ||||||||| |||||||| |||||| | |||||| |||||||| |
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| T |
26143836 |
tgatattgttactaagtcggttaacaagtaccactacaatgcctctgtcattgcatatgttcaagagttattgagaatgaattgggag |
26143923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 40458436 - 40458497
Alignment:
| Q |
100 |
tcgaaaactatcaatgatattgtaactaagccagttaacaagtaccattgttatgcttttgt |
161 |
Q |
| |
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||||||||||| | ||||||||| ||| |||| |||||||||||| | ||||||||||||| |
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| T |
40458436 |
tcgaaaactattattgatattgttacttagccgtttaacaagtaccgtcgttatgcttttgt |
40458497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 42296433 - 42296518
Alignment:
| Q |
134 |
ttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggagatgtagttatgccactct |
219 |
Q |
| |
|
|||||||||| | ||| ||||||| |||||||||| |||| |||| ||| | |||||||||||| || || | |||||||||||| |
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| T |
42296433 |
ttaacaagtatcgttgctatgcttcagtcattgcttgtgtttaggatttattgagaatggattggaaggtgcatttatgccactct |
42296518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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