View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_high_4 (Length: 630)
Name: NF14060_high_4
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 21 - 614
Target Start/End: Original strand, 40979965 - 40980563
Alignment:
| Q |
21 |
agatagatcagagtgtagacaaagtggagtaaagatcacatgaggggacaatttgattatagtgcatacttttacaaaggacgagtagttaataggtgta |
120 |
Q |
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| T |
40979965 |
agatagatcagagtgtagacaaagtggagtgaagatcacatgaggggacaatttgattatagtgcatgctttcacaaaggacgagtagttaatgggtgta |
40980064 |
T |
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| Q |
121 |
tcatattctaggcnnnnnnnnttagatatgttaatatcaattaattatttgggaaacacgacaaagcaaacatgtatgtcttgtcttccaagtattttat |
220 |
Q |
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| T |
40980065 |
tcatattctaggcaaaaaaa-ttagatatgttaatatcaattaattatttgggaaacacgacaaagcaaacatgtatgtcttgtcttccaagtattttat |
40980163 |
T |
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| Q |
221 |
ttaataataataatgaaatttctctttttccatgttgctcgttgccatgattttggctaaattatacaagtttagctttgaattgagttccaccactttg |
320 |
Q |
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| T |
40980164 |
ttaataataataatgacatttctctttttccatgttgctcgttgccatgattttggctaaattatacaagtttagctttgaattgagttccaccactttg |
40980263 |
T |
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| Q |
321 |
atataattttctataattgaatttcaatgagaagacttaacatcaaataacgatgccaagtcttgtccaattccttgttttgtccttgnnnnnnnngttt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40980264 |
atataattttctataattgaatttcaatgagaagactttacatcaaataacgatgccaagtcttgtccaattccttgttttgtccttgttttttttgttt |
40980363 |
T |
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| Q |
421 |
gctctttagtttt------nnnnnnnnnnnnnnnnggtagtttcttggaacatcgaacaaaggagtactttgtttttcattttactgactttggactatg |
514 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40980364 |
gctctttagttttaaaaaataaaataaaaaaaaaaggtagtttcttggaacatcgaacaaaggagtactttgtttttcattttactgactttggactatg |
40980463 |
T |
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| Q |
515 |
tacatgaattcatctattcatacacagagaaaatcaaaagagtcgtgacacaaagatgagggacatattttcttggaaattaattgaactgcctttgttg |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40980464 |
tacatgaattcatctattcatacacagagaaaatcaaaagagtcgtgacacaaagatgagggacatattttcttggaaattaattgaagtgcctttgttg |
40980563 |
T |
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