View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14060_high_7 (Length: 561)
Name: NF14060_high_7
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Original strand, 48210317 - 48210852
Alignment:
| Q |
19 |
caacatagtaaatattttgatatgcaattatcaaatcaatcttttacaatccgtgttgcacttacatgagttgnnnnnnncttttgtattaccacgagaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48210317 |
caacatagtaaatattttgatatgcaattatcaaatcaatcttttacaatccgtgttgcacttacatgagttgtttttttcttttgtattaccacgagaa |
48210416 |
T |
|
| Q |
119 |
tacatgcaaacatttaatttgaatattccatgcgatgaacctaacatatattatatacagt---tcctcccactgaagcccttggatcgatccagtatga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48210417 |
tacatgcaaacatttaatttgaatattccatgcgatgaacctaacatatattatatacagtctttcctcccactgaagcccttggatcgatccagtatga |
48210516 |
T |
|
| Q |
216 |
tccaaaaggtaaaggcaatgttgttattgcttctcctggactagcagcaaatcaaacacaaggactcctcaaccttgctggtgcaagcgaaagtggaagt |
315 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48210517 |
tccaaaaggtaaaggcaaggttgttactgcttctcctggactagcagcaaatcaaacacaaggactcctcaaccttgctggtgcaagtgaaagtggaagt |
48210616 |
T |
|
| Q |
316 |
gcagaattttaagttcaatgtggccatggatccaactattttctcatttggatgtgttcttgaattttacttacttgtattgtgtctcctatgtgttctt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48210617 |
tcagaattttaagttcaatgtggccatggatccaactattttctcatttggatgtgttcttgaattttacttacttgtattgtgtctcctatgtgttctt |
48210716 |
T |
|
| Q |
416 |
tggtttttctttatttaattgcattgtggtcttatttttagtgtggttgtattgtgtcttcttttaaactttggatattggatgtattgcgtttaagtac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48210717 |
tggtttttctttatttaattgcattgtggtcttatttttagtgtggttgtattgtgtcttcttttaaactttggatattggatgtattgcgtttaagtac |
48210816 |
T |
|
| Q |
516 |
aatcgtactatttttaatataaattgtatgatgatg |
551 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48210817 |
aatcgtactatttttaatataaattttatgatgatg |
48210852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18471751 - 18471799
Alignment:
| Q |
121 |
catgcaaacatttaatttgaatattccatgcgatgaacctaacatatat |
169 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||| |||||||||||||| |
|
|
| T |
18471751 |
catgcaaacatttacttttaatatttcatgcgacaaacctaacatatat |
18471799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University