View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14060_high_9 (Length: 537)

Name: NF14060_high_9
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14060_high_9
NF14060_high_9
[»] chr2 (19 HSPs)
chr2 (13-522)||(39492533-39493035)
chr2 (180-522)||(39131369-39131712)
chr2 (207-522)||(39469177-39469490)
chr2 (106-522)||(39125370-39125804)
chr2 (276-522)||(39145247-39145483)
chr2 (418-522)||(39188196-39188300)
chr2 (216-516)||(39424947-39425242)
chr2 (418-516)||(39372297-39372395)
chr2 (269-331)||(39372498-39372560)
chr2 (418-510)||(39224818-39224910)
chr2 (92-199)||(39470851-39470958)
chr2 (13-53)||(39132114-39132154)
chr2 (291-331)||(39180008-39180048)
chr2 (291-331)||(39225015-39225055)
chr2 (291-331)||(39386062-39386102)
chr2 (13-53)||(39470312-39470352)
chr2 (269-331)||(39395954-39396016)
chr2 (291-331)||(39163446-39163486)
chr2 (291-331)||(39204131-39204171)
[»] chr5 (3 HSPs)
chr5 (215-336)||(38599532-38599661)
chr5 (418-469)||(33563521-33563572)
chr5 (290-331)||(33563679-33563720)
[»] chr3 (2 HSPs)
chr3 (291-354)||(51577150-51577213)
chr3 (418-463)||(51577041-51577086)


Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 39492533 - 39493035
Alignment:
Q  13 aaaatctacaagctgcaacaaaatttcactttatcaaaactgactagttctgcgaatctgcgataaatctgttaactcgtttacaagggaatgtgttagc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  39492533 aaaatctacaagctgcaacaaaatttcactttatcaaaactgactagttctg--------cgataaatctgttaactcgtttacaagggaatgtgttagc 39492624  T
Q  113 gggttttctctaccacatatctttacattaggttgtttcttattaggaggataacactcgctgtttccagtaaaaacactctttgcctctctgtagctca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492625 gggttttctctaccacatatctttacattaggttgtttcttattaggaggataacactcgctgtttccagtaaaaacactctttgcctctctgtagctca 39492724  T
Q  213 agaatacgattgtcaatcttgttaagtagatccttgaattctaagttgttatctataatgcactgtagaacagctttgagactagcaacttcttgatctc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492725 agaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcactgtagaacagctttgagactagcaacttcttgatctc 39492824  T
Q  313 tggccttgtcctgagttcatattcaaattatttataactatcatgattcatgaaggggtatgatgatggaatatttcataaaatagaaaccgaataag-n 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||      
T  39492825 tggccttgtcctgagttcatattcaaattatttataactatcatgattcatgaaggggtatgaagatggaatatttcataaaatagaaaccgaataagaa 39492924  T
Q  412 nnnnnnccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaactagttgatt 511  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492925 aaaaaaccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaactagttgatt 39493024  T
Q  512 attgtcgctga 522  Q
    |||||||||||    
T  39493025 attgtcgctga 39493035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 180 - 522
Target Start/End: Complemental strand, 39131712 - 39131369
Alignment:
Q  180 cagtaaaaacactctttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaagttgttatctataatgcactgta 279  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  39131712 cagtaaaaacactatttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgta 39131613  T
Q  280 gaacagctttgagactagcaacttcttgatctctggccttgtcctgagttcatattcaaattatttataactatcatgattcatgaaggggtatgatga- 378  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||       |||||||| |||||  |     
T  39131612 gaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagtatttataactatc-------atgaagggttatgaaaat 39131520  T
Q  379 tggaatatttcataaaatagaaaccgaataag-------nnnnnnnccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagtttta 471  Q
    |||||| |||||||||||| |||  |||||||              ||||||||||||||||||| |||||||||||| | |||||||||||||| ||||    
T  39131519 tggaatttttcataaaataaaaattgaataagaaaaaaataatgaaccttaatttcaatggagttagtttccttgcaagtactctcagaaattagcttta 39131420  T
Q  472 gattctgcacatgttcttcaaagagatcaactagttgattattgtcgctga 522  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  39131419 gattctgcacatgttcttcaaagagaccaaatagttgattattgtcgctga 39131369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 207 - 522
Target Start/End: Complemental strand, 39469490 - 39469177
Alignment:
Q  207 agctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaagttgttatctataatgcactgtagaacagctttgagactagcaacttctt 306  Q
    ||||||| |||||||| ||||||||||||||||||||||| | |||||| ||||||||||| |||||| |||||||||||  ||||||||||||||||||    
T  39469490 agctcaataatacgatcgtcaatcttgttaagtagatcctgggattctaggttgttatctacaatgcattgtagaacagcaatgagactagcaacttctt 39469391  T
Q  307 gatctctggccttgtcctgagttcatattcaaattatttataactatcatgattcatgaaggggtatgatga-tggaatatttcataaaatagaaaccga 405  Q
    ||||| | ||||| ||||||||||| ||||||| || |||||||||       | ||||||| |||||| || || ||| ||||||||||||||||  ||    
T  39469390 gatctttagccttttcctgagttcacattcaaagtacttataacta-------ttatgaaggagtatgaagattgaaatgtttcataaaatagaaattga 39469298  T
Q  406 ataag----nnnnnnnccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaa 501  Q
    |||||           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  39469297 ataagaaaacaaagaaccttaatttcaatggagttggttcccttgcaaatgctctcagaaattagttttagattctgcacatgctcttcgaatagatcaa 39469198  T
Q  502 ctagttgattattgtcgctga 522  Q
    ||||||||||| ||| |||||    
T  39469197 ctagttgattactgttgctga 39469177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 106 - 522
Target Start/End: Complemental strand, 39125804 - 39125370
Alignment:
Q  106 tgttagcgggttttctctaccacatatctttacat--taggttgtttcttattaggaggataacactcgctgtttccagtaaaaacactctttgcctctc 203  Q
    ||||||| ||||| | ||| |||||||||||||||  ||||||||| | |||| ||| ||| |||||| | | ||| |||||||||||| ||||||||||    
T  39125804 tgttagcaggtttccgctagcacatatctttacatattaggttgttgcatatt-ggatgatgacactcaccggttctagtaaaaacactatttgcctctc 39125706  T
Q  204 tgt------agctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaagttgttatctataatgcactgtagaacagctttgagactag 297  Q
    |||      ||||||||||||| |  || |||||||||||||| ||||||||||| || ||||||||||||| |||| || | |||||||  ||||||||    
T  39125705 tgtcttttcagctcaagaatacaagcgtaaatcttgttaagtaaatccttgaattttaggttgttatctatattgcattggataacagctacgagactag 39125606  T
Q  298 caacttcttgatctctggccttgtcctgagttcata---ttcaaattatttataactatcatgattcatgaaggggtatgatgatggaatatttcataaa 394  Q
    ||||||| ||| |||||||||||||||||    | |   |||||| ||||||||| ||| |  || |||||||| |||||| |||||||| |||||||||    
T  39125605 caacttcctgacctctggccttgtcctgatgagaaaacgttcaaagtatttataattataactat-catgaaggtgtatgaagatggaatgtttcataaa 39125507  T
Q  395 atagaaaccgaataagnnnnnnn-----------ccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacat 483  Q
     ||||||  |||||||                  | ||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  39125506 -tagaaattgaataagataagaaaaaaataagaactttaatttcaatagagtcggtttccttgcaattgctctcagaaattagttttagatt-tgcacat 39125409  T
Q  484 gttcttcaaagagatcaactagttgattattgtcgctga 522  Q
    ||||||||||||||||| |||||||||||| || |||||    
T  39125408 gttcttcaaagagatcagctagttgattatcgttgctga 39125370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 276 - 522
Target Start/End: Complemental strand, 39145483 - 39145247
Alignment:
Q  276 tgtagaacagctttgagactagcaacttcttgatctctggccttgtcctgagttcatattcaaattatttataactatcatgattcatgaaggggtatga 375  Q
    ||||||||||||  |||||||||||  |||||||||| ||| || ||||| |||||| |||||| ||||||||||||  ||||       |  |||||||    
T  39145483 tgtagaacagctccgagactagcaatctcttgatctcaggctttatcctgtgttcatgttcaaagtatttataactacgatga-------aatggtatga 39145391  T
Q  376 tgatggaatatttcataaaatagaaaccgaataagnnnnnnnccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagatt 475  Q
     |||||||| ||||||||||| |||   ||| ||        ||||||||||||||||||||| |||||||||| |||||||| | ||||  ||||||||    
T  39145390 agatggaatgtttcataaaattgaataagaaaaa---aaagaccttaatttcaatggagttggcttccttgcaactgctctcaaagattaaatttagatt 39145294  T
Q  476 ctgcacatgttcttcaaagagatcaactagttgattattgtcgctga 522  Q
    |||||||||||||| ||||| ||||||||| ||| |||||| |||||    
T  39145293 ctgcacatgttcttgaaagatatcaactagctgagtattgttgctga 39145247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 522
Target Start/End: Original strand, 39188196 - 39188300
Alignment:
Q  418 ccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaactagttgattattgtc 517  Q
    ||||||||||||||||||||| |||||||||| |||||||| | ||||  |||||||||||||||||||||| ||||| ||||||||| ||| ||||||     
T  39188196 ccttaatttcaatggagttggcttccttgcaactgctctcaaagattaaatttagattctgcacatgttcttgaaagatatcaactagctgagtattgtt 39188295  T
Q  518 gctga 522  Q
    |||||    
T  39188296 gctga 39188300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 216 - 516
Target Start/End: Original strand, 39424947 - 39425242
Alignment:
Q  216 atacgattgtcaatcttgttaagtagatccttga-attctaagttgttatctataatgcactgtagaacagctttgagactagcaacttcttgatctctg 314  Q
    |||||||  ||||| ||||||||||||||| |   |||||| ||||||||||  ||| |||||||  ||||||| ||||||||||| |||||||||| ||    
T  39424947 atacgatcatcaatgttgttaagtagatccctctgattctaggttgttatctccaatacactgtactacagcttcgagactagcaatttcttgatctatg 39425046  T
Q  315 gccttgtcctgagttcatattcaaattatttataactatcatgattcatgaaggggtatgatgatggaatatttcataaaatagaaaccgaataagnnnn 414  Q
    || || ||||| || ||  |||||| ||||||||||||| ||||       | |||| ||| |||||||| ||||||||||||  ||  |||||||        
T  39425047 gctttttcctgtgtacaagttcaaagtatttataactattatga-------aagggtgtgaagatggaatgtttcataaaata--aattgaataagaaaa 39425137  T
Q  415 nnn---ccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaactagttgatt 511  Q
          |||||||||| ||||||||||||| | ||||| | ||||||||||| ||||||  ||||||||||||||||   ||||||||||||| ||||||    
T  39425138 aaagaaccttaatttcgatggagttggttttcatgcaagtactctcagaaatcagttttgcattctgcacatgttctcgcaagagatcaactaattgatt 39425237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 516
Target Start/End: Complemental strand, 39372395 - 39372297
Alignment:
Q  418 ccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaactagttgattattgt 516  Q
    |||| ||||||||||||||||||| ||||||| ||| |||| |||| |||||   |||||| || |||||||  |||||||||||||||| ||| ||||    
T  39372395 ccttgatttcaatggagttggttttcttgcaactgccctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 39372297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 39372560 - 39372498
Alignment:
Q  269 aatgcactgtagaacagctttgagactagcaacttcttgatctctggccttgtcctgagttca 331  Q
    ||||||||| ||||||| | | |||||||||| |||||||||||||||||| |||||||||||    
T  39372560 aatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttca 39372498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 510
Target Start/End: Complemental strand, 39224910 - 39224818
Alignment:
Q  418 ccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaactagttgat 510  Q
    |||| ||||||||||||||||||| ||||||| |||||||| |||| |||||   |||||| ||||||||||  || | |||||||| |||||    
T  39224910 ccttgatttcaatggagttggttttcttgcaactgctctcacaaataagtttggcattctggacatgttcttgcaacatatcaactaattgat 39224818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 39470851 - 39470958
Alignment:
Q  92 tttacaagggaatgtgttagcgggttttctctaccacatatctttacattaggttgtttcttattaggaggataacactcgctgtttccagtaaaaacac 191  Q
    ||||||||| ||  ||||||| ||||||| ||||||| || || |||||||||||||| | |||| ||| ||| |||||| ||  |||||||||||| ||    
T  39470851 tttacaaggaaacatgttagcaggttttcgctaccacgtaactatacattaggttgttgcgtatttggaagatgacactcactacttccagtaaaaatac 39470950  T
Q  192 tctttgcc 199  Q
    | ||||||    
T  39470951 tatttgcc 39470958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 39132154 - 39132114
Alignment:
Q  13 aaaatctacaagctgcaacaaaatttcactttatcaaaact 53  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  39132154 aaaatctacaaactgcaacataatttcactttatcaaaact 39132114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 39180048 - 39180008
Alignment:
Q  291 agactagcaacttcttgatctctggccttgtcctgagttca 331  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  39180048 agactagcaatttcttgatctctggccttatcctgagttca 39180008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 39225055 - 39225015
Alignment:
Q  291 agactagcaacttcttgatctctggccttgtcctgagttca 331  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  39225055 agactagcaatttcttgatctctggccttatcctgagttca 39225015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 39386062 - 39386102
Alignment:
Q  291 agactagcaacttcttgatctctggccttgtcctgagttca 331  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  39386062 agactagcaatttcttgatctctggccttatcctgagttca 39386102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 39470312 - 39470352
Alignment:
Q  13 aaaatctacaagctgcaacaaaatttcactttatcaaaact 53  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  39470312 aaaatctacaaggtgcaacaaaatttcactttatcataact 39470352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 39395954 - 39396016
Alignment:
Q  269 aatgcactgtagaacagctttgagactagcaacttcttgatctctggccttgtcctgagttca 331  Q
    |||||| |||||||||| |   |||| ||||| |||||||||||||||||| |||||||||||    
T  39395954 aatgcattgtagaacagttcccagacaagcaatttcttgatctctggccttatcctgagttca 39396016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 39163486 - 39163446
Alignment:
Q  291 agactagcaacttcttgatctctggccttgtcctgagttca 331  Q
    |||||||||| ||||| |||||||||||| |||||||||||    
T  39163486 agactagcaatttcttcatctctggccttatcctgagttca 39163446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 39204131 - 39204171
Alignment:
Q  291 agactagcaacttcttgatctctggccttgtcctgagttca 331  Q
    |||||||||| ||||| |||||||||||| |||||||||||    
T  39204131 agactagcaatttcttcatctctggccttatcctgagttca 39204171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 38599661 - 38599532
Alignment:
Q  215 aatacgattgtcaatcttgttaagtagatccttgaattctaagttgtta--------tctataatgcactgtagaacagctttgagactagcaacttctt 306  Q
    |||| ||| ||||||||||||||||||||||| | |||||| |||||||        |||||||||||| |||||||| || ||||||||||||||| ||    
T  38599661 aatatgatcgtcaatcttgttaagtagatcctgggattctaggttgttaacttgatatctataatgcaccgtagaacaactatgagactagcaacttttt 38599562  T
Q  307 gatctctggccttgtcctgagttcatattc 336  Q
    ||| |||||||||||| |||||||||||||    
T  38599561 gatgtctggccttgtcatgagttcatattc 38599532  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 33563572 - 33563521
Alignment:
Q  418 ccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttt 469  Q
    |||| ||||||||||||||||||| |||||||| ||||||| |||| |||||    
T  33563572 ccttgatttcaatggagttggttttcttgcaaaagctctcacaaatcagttt 33563521  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 33563720 - 33563679
Alignment:
Q  290 gagactagcaacttcttgatctctggccttgtcctgagttca 331  Q
    ||||||||||| |||||||||||||||||| |||||| ||||    
T  33563720 gagactagcaatttcttgatctctggccttatcctgaattca 33563679  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 51577213 - 51577150
Alignment:
Q  291 agactagcaacttcttgatctctggccttgtcctgagttcatattcaaattatttataactatc 354  Q
    |||||||||| |||||| ||||| || || |||||| |||| |||||| |||||||||||||||    
T  51577213 agactagcaatttcttggtctcttgctttatcctgaattcacattcaacttatttataactatc 51577150  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 51577086 - 51577041
Alignment:
Q  418 ccttaatttcaatggagttggtttccttgcaaatgctctcagaaat 463  Q
    |||| ||||||||||||||||||| ||||||  |||||||||||||    
T  51577086 ccttgatttcaatggagttggttttcttgcagttgctctcagaaat 51577041  T

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