View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_10 (Length: 530)
Name: NF14060_low_10
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Original strand, 35228186 - 35228678
Alignment:
| Q |
20 |
catcactggtgccataaccaactatagtcactgtatgatctaaataaattccacattttcctttcaaaattccacttgagtaaaattgaaaagcgcgttt |
119 |
Q |
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| T |
35228186 |
catcactggtaccataaccaactatagtaactgtatgatctaaatcaattccacattttcctttcaaaattccacttgagtaaaattgaaaagcgcgttt |
35228285 |
T |
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| Q |
120 |
tgtcgcggcaatataaaccgctataggttgatttgccaccgcttttaagagcgccttttcattattggcgggaacatgctcatatcccttaattttagca |
219 |
Q |
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| T |
35228286 |
tgtcgcggcgatataaaccgctataggttgatttgccaccgcttttaagagcgccttttcattattggcgggaacatgctcatatcccttaattttagca |
35228385 |
T |
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| Q |
220 |
acattgtaggttcctttcctaacattgcatttaccatcaactcttgtataagggtaatttgtttcacttgttattcctccttttttaactatgaaatcac |
319 |
Q |
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| T |
35228386 |
acattgtaggttcctttcctaacattgcatttaccatcaacccttgtataagggtaatttgtttcacttgttattcctccttttttaactatgaaatcac |
35228485 |
T |
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| Q |
320 |
aagcatcttctacataaccaccattgcatccatcagttgtattagttttcacacaatccactagctcttgctcagagagtgatactaatcttcctgtggt |
419 |
Q |
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| T |
35228486 |
aagcatcttctacataaccaccattgcatccatcagttgtattagttttgacacaatccactagctcttgctcagagagtgatactaatcttcctgtggt |
35228585 |
T |
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| Q |
420 |
tatttgatgaataccttctattgcagccacaattgcaaatgcccaacaactacctataaacaagaatcaacatcatcttaattagcataattt |
512 |
Q |
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| T |
35228586 |
tatttgatgaataccttctattgcagccacagttgcaaatgcccaacaactacctataaacaagaatcaacatcatcttaattagcataattt |
35228678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 477
Target Start/End: Original strand, 31176914 - 31176979
Alignment:
| Q |
412 |
cctgtggttatttgatgaataccttctattgcagccacaattgcaaatgcccaacaactacctata |
477 |
Q |
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| T |
31176914 |
cctgttgttatttggtggataccctctatggaagccacagttgaaaatgcccaacaactacctata |
31176979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 29746586 - 29746533
Alignment:
| Q |
416 |
tggttatttgatgaataccttctattgcagccacaattgcaaatgcccaacaac |
469 |
Q |
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| T |
29746586 |
tggttatttgttggataccttctattgcagccaccgtagaaaatgcccaacaac |
29746533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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