View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_11 (Length: 509)
Name: NF14060_low_11
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 26125803 - 26126042
Alignment:
| Q |
19 |
aattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaat--cggaaaggatttttctcagatcatgggataatat |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |
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| T |
26125803 |
aattaaatgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatatcggaaaggatttttctcatgtcatggtataatat |
26125902 |
T |
|
| Q |
117 |
tattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggttttgtttacacaacatgctatca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
26125903 |
tattgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatgcagttatggttttgtttacacaacatgctatca |
26126002 |
T |
|
| Q |
217 |
actcacttatgtcaatgttaagttaaatacttatacttga |
256 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26126003 |
actcacttatgtcaatgttaagttaaatacttatacttga |
26126042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 290 - 489
Target Start/End: Original strand, 26126075 - 26126273
Alignment:
| Q |
290 |
aagaaaaagtaatttatcttgagacaaaagttgtatgtaaattaggagataaatttatagaaattagaccttttaagtagaaagttgcatgaaaagttag |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126075 |
aagaaaaagtaatttatcttgagacaaaagttgtatgtaaattaggagataaatttattgaaattagaccttttaagtagaaagttgcatgaaaagttag |
26126174 |
T |
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| Q |
390 |
tttaccaactcaatattaaagcgatgaagaatgctaaaagtaaggtagctagcgtagtgacataatttagatagtggtatacttgttttttcttttcctt |
489 |
Q |
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| T |
26126175 |
tttaccaactcaatattaaagcgatgaagaatgctaaaagtaaggtagctagtgtagtgacataatttaggtagtggtatacttg-tttttcttttcctt |
26126273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 294 - 492
Target Start/End: Original strand, 26127839 - 26128035
Alignment:
| Q |
294 |
aaaagtaatttatcttgagacaaaagttgtatgtaaattaggagataaatttatagaaattagaccttttaagtagaaagttgcatgaaaagttagttta |
393 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||||| |||| ||||| || ||||||||||||| ||| |||||||||| | |||||||||| |
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| T |
26127839 |
aaaaggaatttatcttgagacaaaagttgtatgaaaattatgaga-aaattcatt--aattagaccttttgtgtaataagttgcatggagagttagttta |
26127935 |
T |
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| Q |
394 |
ccaactcaatattaaagcgatgaagaatgctaaaagtaaggtagctagcgtagtgacataatttagatagtggtatacttgt-tttttcttttccttccc |
492 |
Q |
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||||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||||| ||| |||||||||||||||| |
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| T |
26127936 |
ccaactcaatattaaagtgacgaagaatactaaaagtaaggtaactagcgtagtgacataatttaggtagaggtatacatgtaattttcttttccttccc |
26128035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 26127565 - 26127727
Alignment:
| Q |
19 |
aattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatttttctcagatcatgggataatatta |
118 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||| ||||| |||||| |||||||||| ||||| |||||| || |
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| T |
26127565 |
aattaagcatttaataataaagtggcaaaaaacttgaaggataaggtaacatactagcataaattggaaagaatttttctcacgtcatgtgataattcta |
26127664 |
T |
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| Q |
119 |
ttgtctttcagaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttga |
181 |
Q |
| |
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||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
26127665 |
ttgtctttcgaaaagatgatgactatcttggaaaattcttaataaagttattatgaaccttga |
26127727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 26126681 - 26126919
Alignment:
| Q |
19 |
aattaagtgtttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatttttctcagatcatgggataatatta |
118 |
Q |
| |
|
|||||||| ||||||||| ||||| ||| ||| ||| ||| ||||||||| |||| ||||| ||||| || || ||| | ||| | |||| ||| |
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| T |
26126681 |
aattaagtatttaataatgaagtgacaataaatcataaacatcaggtaacatactagcttaaattggaaacgaattctcttatgtcacgttataaattta |
26126780 |
T |
|
| Q |
119 |
ttgtctttcagaaagatgataa-ctatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggttttgtttacacaacatgctatcaa |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| | | | | ||||||||||||||||| |||||||| |
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| T |
26126781 |
ttgtctttcagaaagatgataaactatcttggaaaattcttaatgaatttatcatgaacattgaggcatttaccgttttgtttacacaacaagctatcaa |
26126880 |
T |
|
| Q |
218 |
ctcacttatgtcaatgttaagttaaatacttatacttga |
256 |
Q |
| |
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||| ||||| ||| |||||| |||||||| ||| |||| |
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| T |
26126881 |
atcatttatgccaaagttaagctaaatactgatatttga |
26126919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 313 - 492
Target Start/End: Original strand, 26125221 - 26125401
Alignment:
| Q |
313 |
acaaaagttgtatgtaaattaggagataaatttatagaaattagaccttttaagtagaaagttgcatgaaaagttagtttaccaactcaatattaaagcg |
412 |
Q |
| |
|
||||||||| || | ||||||||||| ||| | || ||||||| |||||| ||| || ||||||| | ||||| |||||||||||||||||||| | |
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| T |
26125221 |
acaaaagttatacgaaaattaggagaaaaagtaatttaaattaggccttttgtgtaaaatgttgcatagagagttaacttaccaactcaatattaaagtg |
26125320 |
T |
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| Q |
413 |
atgaagaatgctaaaagtaaggtagctagcgtagtgacataatttagatagtggtatacttgt-tttttcttttccttccc |
492 |
Q |
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||||| ||||||||||||| |||||||| |||| |||||||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
26125321 |
atgaataatgctaaaagtacaatagctagcatagtttcataatttaggtagtgctatacttgtatttttcttttccttccc |
26125401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 26124939 - 26125158
Alignment:
| Q |
28 |
tttaataataaagtggcaaaaaactttaagcataaggtaacattctagagtaaatcggaaaggatttttctcagatcatgggataatattattgtctttc |
127 |
Q |
| |
|
||||||| |||||| ||| ||| ||||| |||||||||| || ||||||||||| | |||||| || || || || | |||||| | |||||||||| |
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| T |
26124939 |
tttaatattaaagtcacaataaattttaatcataaggtaatatactagagtaaattgaaaaggaattctcacaatgcacgagataatttcattgtctttc |
26125038 |
T |
|
| Q |
128 |
agaaagatgataactatcttggaaaattcttaatgaagttatcatgaactttgatggagtcatggttttgtttacacaacatgctatcaactcacttatg |
227 |
Q |
| |
|
||||||| | | | ||| || |||||||||||||| |||||||||| |||| | | | || ||||||||||| |||||||||||||| ||| ||||| |
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| T |
26125039 |
ggaaagataaacattgtctcgggaaattcttaatgaacttatcatgaagcttgaggcatttatcgttttgtttacccaacatgctatcaaatcatttatg |
26125138 |
T |
|
| Q |
228 |
tcaatgttaagttaaatact |
247 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
26125139 |
ccaatgttaatctaaatact |
26125158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 485
Target Start/End: Original strand, 26124441 - 26124523
Alignment:
| Q |
404 |
attaaagcgatgaagaatgctaaaagtaaggtagctagcgtagtgacataatttagatagtggtatacttgt-tttttctttt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| || |||||| ||| | |||||||||||| |||||||||| |
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|
| T |
26124441 |
attaaagcgatgaagaatgctaaaagtaaggtagcttgcgtattggcataatatagggaatggtatacttgtatttttctttt |
26124523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 484
Target Start/End: Original strand, 26126967 - 26127147
Alignment:
| Q |
305 |
atcttgagacaaaagttgtatgtaaattaggagataaattt-atagaaattagaccttttaagtagaaagttgcatgaaaagttagtttaccaa-ctcaa |
402 |
Q |
| |
|
||||||||||||||||||| || || |||| ||| |||||| ||| |||||||||||||| ||| ||||||||| ||| | | ||||| |||| ||||| |
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|
| T |
26126967 |
atcttgagacaaaagttgtgtgaaagttagcagaaaaatttgata-aaattagaccttttgtgtaaaaagttgcaagaagaataagtttcccaaactcaa |
26127065 |
T |
|
| Q |
403 |
tattaaagcgatgaagaatgctaaaagtaaggtagctagcgtagtgacataatttagatagtggtatacttgt-tttttcttt |
484 |
Q |
| |
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| ||||| || |||||||||||||| ||| ||||||| ||||||| |||||| || |||| |||||||||| ||||||||| |
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| T |
26127066 |
t-ttaaaatgacgaagaatgctaaaattaacgtagctaacgtagtggcataatatatgtagttgtatacttgtatttttcttt |
26127147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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