View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_16 (Length: 460)
Name: NF14060_low_16
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 36694058 - 36693601
Alignment:
| Q |
1 |
caatatcaaaagattggaaacctatcaaggcaatgtgcatatcggattgatgccctaaatggcttccttaacaacttcactaaggtactaattgacatga |
100 |
Q |
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| T |
36694058 |
caatatcaaaagattggaaacctatcaaggcaatgtgcatatcggattgatgcccttaatggtttccttaacaacttcactaaggtactaattaacatga |
36693959 |
T |
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| Q |
101 |
tatatttttattgtaaagtttagtatttcttggagaaattaatgacttattttttaatatgttaaacnnnnnnnatagacaccaaaggaaatcaaaagca |
200 |
Q |
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| T |
36693958 |
tat--ttttattgcaaagttcagtattttttgtagaaattaatgacttatattttaatatgttacactttttttatagacaccaaaggaaatcaaaagca |
36693861 |
T |
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| Q |
201 |
aaatacaagaaccatgcattaagatgagcatggaaactggaaaagctttaaagcaattatcaatatcaatccacaaaatggttccaccaacctcagcaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36693860 |
aaatacaagaaccatgcattaagatgagcatggaaactggaaaagctttaaagcaattatcaatatcaatccacaaaatggctccaccaacctcagcaga |
36693761 |
T |
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| Q |
301 |
aactcacattgcaacatctaagatttatgccacaaacctaaggtccatgatcaaaacaaaactgtgggaagacacaaatttgtttgaggttgttcctgtt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36693760 |
aactcacattgcaacatctaagatttatgccacaaacctaaggtccatgatcaaaacaaaattgtgggaagacacaaatttgtttgaggttgttcctgtt |
36693661 |
T |
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| Q |
401 |
gtaactgtggcttcattattgcttgatgtagtttcttccactgaaaaacttgcagaatca |
460 |
Q |
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| T |
36693660 |
gtaactgtggcttcattattgcttgatgtagtttcttccactgaaaaacttgcagaatca |
36693601 |
T |
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