View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_17 (Length: 437)
Name: NF14060_low_17
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Complemental strand, 43640245 - 43639842
Alignment:
| Q |
15 |
caaaggcaatgacatagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggt |
114 |
Q |
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| T |
43640245 |
caaaggcaatgacatagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggt |
43640146 |
T |
|
| Q |
115 |
tctttcagagcttgtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacat |
214 |
Q |
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| T |
43640145 |
tctttcagagcttgtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacat |
43640046 |
T |
|
| Q |
215 |
gtttatacattcatgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaa |
314 |
Q |
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| T |
43640045 |
gtttatacattcatgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaa |
43639946 |
T |
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| Q |
315 |
aacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtagaccctcaaggagtgaaagaaggtgttaagggttta |
414 |
Q |
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| T |
43639945 |
aacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtggaccctcaaggagtgaaagaaggtgttaagggttta |
43639846 |
T |
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| Q |
415 |
gtag |
418 |
Q |
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| T |
43639845 |
gtag |
43639842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 414
Target Start/End: Original strand, 486412 - 486525
Alignment:
| Q |
301 |
cttctagaagaaaaaacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtagaccctcaaggagtgaaagaag |
400 |
Q |
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||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |
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| T |
486412 |
cttctagaagaaaaaactgtccccggaatagtggataaatttggatggtgtacatgggatgcattttatcttaaggtacaccctcaaggagtttgggaag |
486511 |
T |
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| Q |
401 |
gtgttaagggttta |
414 |
Q |
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| T |
486512 |
gtgttaaggattta |
486525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 36432444 - 36432407
Alignment:
| Q |
331 |
gttgataaatttggatggtgtacatgggatgcatttta |
368 |
Q |
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| T |
36432444 |
gttgataaatttggttggtgtacatgggatgcttttta |
36432407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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