View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14060_low_19 (Length: 426)

Name: NF14060_low_19
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14060_low_19
NF14060_low_19
[»] chr2 (8 HSPs)
chr2 (8-269)||(44761953-44762213)
chr2 (338-412)||(36733157-36733231)
chr2 (338-412)||(22685428-22685502)
chr2 (338-412)||(44761810-44761884)
chr2 (338-412)||(45679137-45679211)
chr2 (338-412)||(36737310-36737384)
chr2 (338-410)||(25588013-25588084)
chr2 (366-409)||(25138574-25138617)
[»] chr1 (8 HSPs)
chr1 (338-412)||(21350701-21350775)
chr1 (338-412)||(6832888-6832962)
chr1 (339-412)||(39052055-39052128)
chr1 (342-409)||(44891132-44891199)
chr1 (342-412)||(24721218-24721288)
chr1 (346-412)||(18120231-18120297)
chr1 (346-412)||(28478073-28478139)
chr1 (342-412)||(45473755-45473825)
[»] scaffold0231 (1 HSPs)
scaffold0231 (338-412)||(19259-19333)
[»] scaffold0174 (3 HSPs)
scaffold0174 (338-412)||(14744-14818)
scaffold0174 (338-412)||(3646-3720)
scaffold0174 (338-412)||(9768-9842)
[»] chr6 (2 HSPs)
chr6 (338-412)||(22555733-22555807)
chr6 (338-412)||(29043968-29044042)
[»] chr5 (6 HSPs)
chr5 (338-412)||(16062322-16062395)
chr5 (360-412)||(26748734-26748786)
chr5 (342-412)||(12354755-12354825)
chr5 (342-412)||(14027242-14027312)
chr5 (368-412)||(21402243-21402287)
chr5 (342-410)||(8834550-8834618)
[»] chr4 (10 HSPs)
chr4 (338-412)||(55581992-55582066)
chr4 (342-412)||(12621969-12622039)
chr4 (342-412)||(16027469-16027539)
chr4 (370-412)||(17958036-17958078)
chr4 (346-412)||(25512325-25512391)
chr4 (346-412)||(45315561-45315627)
chr4 (366-409)||(14628964-14629007)
chr4 (342-409)||(44024934-44025001)
chr4 (342-412)||(46225788-46225858)
chr4 (338-412)||(46739738-46739812)
[»] chr7 (6 HSPs)
chr7 (341-412)||(11314492-11314563)
chr7 (342-412)||(15577356-15577426)
chr7 (346-412)||(4692049-4692115)
chr7 (346-407)||(43747135-43747196)
chr7 (338-382)||(9255732-9255776)
chr7 (338-382)||(9314474-9314518)
[»] scaffold0108 (1 HSPs)
scaffold0108 (338-412)||(8359-8433)
[»] chr3 (7 HSPs)
chr3 (338-412)||(12539980-12540054)
chr3 (338-409)||(50352381-50352452)
chr3 (338-412)||(15026360-15026434)
chr3 (338-400)||(50756707-50756769)
chr3 (342-408)||(12860575-12860641)
chr3 (342-401)||(16180743-16180802)
chr3 (342-412)||(17668876-17668946)
[»] scaffold0379 (2 HSPs)
scaffold0379 (338-412)||(9243-9318)
scaffold0379 (338-412)||(16435-16510)
[»] scaffold0230 (1 HSPs)
scaffold0230 (338-412)||(8153-8227)
[»] scaffold0125 (1 HSPs)
scaffold0125 (342-412)||(24294-24364)
[»] chr8 (13 HSPs)
chr8 (338-412)||(5079674-5079748)
chr8 (342-412)||(6574441-6574511)
chr8 (342-409)||(12800180-12800247)
chr8 (338-397)||(22343749-22343808)
chr8 (338-397)||(22355409-22355468)
chr8 (338-400)||(20518422-20518484)
chr8 (342-412)||(36733969-36734039)
chr8 (342-412)||(2718165-2718235)
chr8 (342-412)||(22473013-22473083)
chr8 (342-412)||(36406713-36406783)
chr8 (346-412)||(38988016-38988082)
chr8 (346-412)||(39019113-39019179)
chr8 (342-406)||(36729220-36729284)
[»] scaffold0004 (3 HSPs)
scaffold0004 (338-400)||(64787-64849)
scaffold0004 (340-395)||(67516-67571)
scaffold0004 (338-400)||(74237-74299)
[»] scaffold0123 (1 HSPs)
scaffold0123 (346-412)||(15555-15621)
[»] scaffold0121 (1 HSPs)
scaffold0121 (342-412)||(18878-18948)
[»] scaffold0213 (1 HSPs)
scaffold0213 (342-412)||(17757-17827)
[»] scaffold0056 (1 HSPs)
scaffold0056 (338-412)||(15100-15174)
[»] scaffold0005 (1 HSPs)
scaffold0005 (366-409)||(188376-188419)
[»] scaffold0505 (1 HSPs)
scaffold0505 (342-412)||(3456-3526)
[»] scaffold0063 (1 HSPs)
scaffold0063 (346-412)||(61305-61371)
[»] scaffold0017 (1 HSPs)
scaffold0017 (342-412)||(25175-25245)
[»] scaffold1256 (1 HSPs)
scaffold1256 (342-411)||(823-892)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 44762213 - 44761953
Alignment:
Q  8 gcattgggttggagtaactgtgttcacgagaaatgatggaatagtcataaatgtaaatgaggcagaatttgcacattaatgtgtttcacgggatttacac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44762213 gcattgggttggagtaactgtgttcacgagaaatgatggaatagtcataaatgtaaatgaggcagaatttgcacattaatgtgtttcacgggatttacac 44762114  T
Q  108 ttgcaaaggttaattgggtgaagacaagacaacggctcttgtactagttgcagtaataagcagataagctagtttgataggagatgttcttttgcagaag 207  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44762113 tttcaaaggttaattgggtgaagacaagacaacggctcttgtactagttgcagtaataagcagataagctagtttgataggagatgttcttttgcagaag 44762014  T
Q  208 atagtagataaattaattaatgaattggagatacattagttaattgaatttaaagtgtttgg 269  Q
    |||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  44762013 atagtagataaattaa-taatgaattgtagatatattagttaattgaatttaaagtgtttgg 44761953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 36733157 - 36733231
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36733157 ttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaataaatgttgttat 36733231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 22685502 - 22685428
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  22685502 ttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 22685428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 44761884 - 44761810
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  44761884 ttgttttatgttgataaattctcttatctaaattattgtttattagtattactaatgatgaatagatgttgttat 44761810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 45679211 - 45679137
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  45679211 ttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatggatgttgttat 45679137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 36737310 - 36737384
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  ||||||||||||||||||||||   |||||||||||||||||| ||||||||||    
T  36737310 ttgttttatgttgataaattctcttatctaaattattgtttataggtattgctaatgatgaatagatgttgttat 36737384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 25588013 - 25588084
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgtt 410  Q
    |||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||  ||||||||    
T  25588013 ttgttttatgttgataaattctcttatctaaattattg-ttattattattgctaatgatgaattgatgttgtt 25588084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 25138617 - 25138574
Alignment:
Q  366 taaattattgtttattaatattgctaatgatgaataaatgttgt 409  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||    
T  25138617 taaattactgtttattagtattgctaatgatgaatagatgttgt 25138574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 21350701 - 21350775
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21350701 ttgttttatgttgataaatcctcttatctaaattattgtttattaatattgctaatgatgaatagatgttgttat 21350775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 6832962 - 6832888
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  6832962 ttgttttatgttgataaatcctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 6832888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 39052128 - 39052055
Alignment:
Q  339 tgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||| |||||||||||||  |||||||||||||||||||||||| ||||| | ||||||||| |||||||||||    
T  39052128 tgttatatgttgataaattctcttatctaaattattgtttattagtattgttgatgatgaattaatgttgttat 39052055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 44891199 - 44891132
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgt 409  Q
    |||||||||||||||  |||||  ||||||| ||||||||| ||||||||||||||||||||||||||    
T  44891199 tttatgttgataaattctcttacttaaattactgtttattagtattgctaatgatgaataaatgttgt 44891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 24721218 - 24721288
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  24721218 tttatgttgataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgttat 24721288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 18120297 - 18120231
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||  ||| |  ||||||||||||||||| | || ||||||||||||||||||||||||    
T  18120297 tgttgataaattctctaacttaaattattgtttattagttttactaatgatgaataaatgttgttat 18120231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Original strand, 28478073 - 28478139
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||  ||| |  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  28478073 tgttgataaattctctaacttaaattattgtttattagttttactaatgatgaatagatgttgttat 28478139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 45473825 - 45473755
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  | |||  ||||||||||||||||| | || |||| |||||||| ||||||||||    
T  45473825 tttatgttgataaattcttttacttaaattattgtttattacttttactaacgatgaatagatgttgttat 45473755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 19259 - 19333
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  19259 ttgttttatgttgataaatcctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 19333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 14818 - 14744
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  14818 ttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 14744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 3720 - 3646
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||| |||||||||  |||||| |||||||| |||||||| |||||||||||||||||| ||||||||||    
T  3720 ttgttttatattgataaattctcttatataaattatagtttattagtattgctaatgatgaatagatgttgttat 3646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 9842 - 9768
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||| |||||||||  |||||| |||||||| |||||||| |||||||||||||||||| ||||||||||    
T  9842 ttgttttatattgataaattctcttatataaattatagtttattagtattgctaatgatgaatagatgttgttat 9768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 22555807 - 22555733
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  22555807 ttgttttatgttgataaatcctcttatctaaattattgtttattagaattgctaatgatgaatagatgttgttat 22555733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 29044042 - 29043968
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  29044042 ttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatatatgttgttat 29043968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 16062395 - 16062322
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  16062395 ttgttttatgttgataaatct-cttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 16062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 26748786 - 26748734
Alignment:
Q  360 cttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  26748786 cttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 26748734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 12354825 - 12354755
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||||||| ||||||  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  12354825 tttatgttgataaattttcttacttaaattattgtttattagttttactaatgatgaatagatgttgttat 12354755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 14027242 - 14027312
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  14027242 tttatgttgataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgttat 14027312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 21402243 - 21402287
Alignment:
Q  368 aattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  21402243 aattattgtttattagtattgctaatgatgaatagatgttgttat 21402287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 8834550 - 8834618
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgtt 410  Q
    |||||||| ||||||  |||||  |||||||||||| |||| | || ||||||||||||| ||||||||    
T  8834550 tttatgtttataaattctcttacttaaattattgttaattagttttactaatgatgaatatatgttgtt 8834618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 55582066 - 55581992
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  55582066 ttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 55581992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 12622039 - 12621969
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  12622039 tttatgttgataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgttat 12621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 16027469 - 16027539
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  16027469 tttatgttgataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgttat 16027539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 17958078 - 17958036
Alignment:
Q  370 ttattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  17958078 ttattgtttattagtattgctaatgatgaatagatgttgttat 17958036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 25512391 - 25512325
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||| ||||||  ||||||||||||||||| | || ||||||||||||| |||| |||||    
T  25512391 tgttgataaatattcttacttaaattattgtttattagttttactaatgatgaatagatgtcgttat 25512325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 412
Target Start/End: Original strand, 45315561 - 45315627
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||| ||||||  |||||||||||| |||| | || ||||||||||||| ||||||||||    
T  45315561 tgttgataaattttcttacttaaattattgttaattagttttactaatgatgaatagatgttgttat 45315627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 14629007 - 14628964
Alignment:
Q  366 taaattattgtttattaatattgctaatgatgaataaatgttgt 409  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||    
T  14629007 taaattactgtttattagtattgctaatgatgaatagatgttgt 14628964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 44024934 - 44025001
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgt 409  Q
    ||||||||||||| |  |||||  ||||||| ||||||| | |||||||||||||||||| |||||||    
T  44024934 tttatgttgataagttctcttacttaaattaatgtttatcagtattgctaatgatgaatagatgttgt 44025001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 46225788 - 46225858
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || |||| ||||||||  |||||||||    
T  46225788 tttatgttgataaattctcttacttaaattattgtttattagttttactaaagatgaataggtgttgttat 46225858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 46739812 - 46739738
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||| |||||||||||  |||||  ||||||||||||||||| | || |||| ||||||||  |||||||||    
T  46739812 ttgttttgtgttgataaattctcttacttaaattattgtttattagttttactaaagatgaataggtgttgttat 46739738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 11314492 - 11314563
Alignment:
Q  341 ttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  11314492 ttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 11314563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 15577356 - 15577426
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  15577356 tttatgttgataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgttat 15577426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Original strand, 4692049 - 4692115
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||  ||| |  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  4692049 tgttgataaattctctaacttaaattattgtttattagttttactaatgatgaatagatgttgttat 4692115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 43747196 - 43747135
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgtt 407  Q
    ||||||||||| |||| |  ||||||||||||||||| | || ||||||||||| |||||||    
T  43747196 tgttgataaattttctaacttaaattattgtttattagttttactaatgatgaacaaatgtt 43747135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 9255776 - 9255732
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttatta 382  Q
    ||||||| ||||||||||| ||||||  |||||||||||||||||    
T  9255776 ttgttttgtgttgataaattttcttacttaaattattgtttatta 9255732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 9314474 - 9314518
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttatta 382  Q
    ||||||| ||||||||||| ||||||  |||||||||||||||||    
T  9314474 ttgttttgtgttgataaattttcttacttaaattattgtttatta 9314518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 8359 - 8433
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||    
T  8359 ttgttttatgttgataaatcctcttatctaaattaatgtttattagtattgctaataatgaatagatgttgttat 8433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 12540054 - 12539980
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  12540054 ttgttttatgttgatatattctcttatctaaattattgtttattagtattgctaatgatgaatagatgttgttat 12539980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 50352381 - 50352452
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgt 409  Q
    ||||||||||| |||||||  |||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  50352381 ttgttttatgtggataaattctcttatctaaattattgtttattagtatttctaatgatgaatagatgttgt 50352452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 15026360 - 15026434
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||| |||||||||||  |||||  ||||||||||||||||| |||||||||||||||||  ||||||||||    
T  15026360 ttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatgaattgatgttgttat 15026434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 50756707 - 50756769
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaat 400  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||| | |||||||||    
T  50756707 ttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatgaat 50756769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 12860575 - 12860641
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttg 408  Q
    |||||||||||||||  |||||  ||||||||||||||||||| || ||||||||||||| ||||||    
T  12860575 tttatgttgataaattctcttacttaaattattgtttattaattttactaatgatgaatagatgttg 12860641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 16180743 - 16180802
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaata 401  Q
    ||||||||||||| |  |||||  ||||||| ||||||||| ||||||||||||||||||    
T  16180743 tttatgttgataagttctcttacttaaattactgtttattagtattgctaatgatgaata 16180802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 17668946 - 17668876
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  |||| |||||||||||| | || |||||||| |||| ||||||||||    
T  17668946 tttatgttgataaattctcttacttaaactattgtttattagttttactaatgataaatagatgttgttat 17668876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 9318 - 9243
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattatt-gtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  9318 ttgttttatgttgataaattctcttatctaaattatttgtttattagtattgctaatgatgaatagatgttgttat 9243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 16510 - 16435
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattatt-gtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  16510 ttgttttatgttgataaattctcttatctaaattatttgtttattagtattgctaatgatgaatagatgttgttat 16435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 8153 - 8227
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  ||||||||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  8153 ttgttttatgttgataaattctcttatctaaattattgtttattagcattcctaatgatgaatagatgttgttat 8227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 24364 - 24294
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  24364 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaatagatgtttttat 24294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 5079748 - 5079674
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||  |||| ||||||||||    
T  5079748 ttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgaaaaatagatgttgttat 5079674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 6574441 - 6574511
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  6574441 tttatgttgataaattctcttacttaaattattgtttattagttttactaatgatgaatatatgttgttat 6574511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 12800247 - 12800180
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgt 409  Q
    ||||||||||||| |  |||||  ||||||| ||||||||| |||||||||||||||||| |||||||    
T  12800247 tttatgttgataagttctcttacttaaattactgtttattagtattgctaatgatgaatagatgttgt 12800180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 22343808 - 22343749
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatg 397  Q
    ||||||| |||||||||||  |||||  ||||||||||||||||| ||||||||||||||    
T  22343808 ttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatg 22343749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 22355468 - 22355409
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatg 397  Q
    ||||||| |||||||||||  |||||  ||||||||||||||||| ||||||||||||||    
T  22355468 ttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatg 22355409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 20518422 - 20518484
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaat 400  Q
    ||||||| |||||||||||  |||||  ||||||||||||||| | |||||||||||||||||    
T  20518422 ttgttttgtgttgataaattctcttacttaaattattgtttataagtattgctaatgatgaat 20518484  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 36733969 - 36734039
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||  | || ||||||||||||| ||||||||||    
T  36733969 tttatgttgataaattctcttacttaaattattgtttattggttttactaatgatgaatagatgttgttat 36734039  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 2718165 - 2718235
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  |||||| |||||||||| | || | ||||||||||| ||||||||||    
T  2718165 tttatgttgataaattctcttacttaaattgttgtttattagttttaccaatgatgaatagatgttgttat 2718235  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 22473083 - 22473013
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    ||||||||||| |||  |||||  ||||||||||||||||| | || |||||||| |||| ||||||||||    
T  22473083 tttatgttgatgaattctcttacttaaattattgtttattagttttactaatgatcaatagatgttgttat 22473013  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 36406713 - 36406783
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||| ||||||||  |||||  ||||||||||||||||| | || ||||||||||| | ||||||||||    
T  36406713 tttatggtgataaattctcttacttaaattattgtttattagttttactaatgatgaagagatgttgttat 36406783  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 38988082 - 38988016
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||  ||| |  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  38988082 tgttgataaattctctaacttaaattattgtttattagttttactaatgatgaatagatgttgttat 38988016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 39019179 - 39019113
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||  ||| |  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  39019179 tgttgataaattctctaacttaaattattgtttattagttttactaatgatgaatagatgttgttat 39019113  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 36729220 - 36729284
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgt 406  Q
    ||||||||||||| |  |||||  ||||||| ||||||||| ||||||||||||| |||| ||||    
T  36729220 tttatgttgataagttctcttacttaaattactgtttattagtattgctaatgattaatagatgt 36729284  T

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Target: scaffold0004 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 64849 - 64787
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaat 400  Q
    ||||| |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  64849 ttgttgtatgttgataaattctcttatctaaattattgtttattagtattgctaatgatgaat 64787  T

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Target: scaffold0004; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 67516 - 67571
Alignment:
Q  340 gttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatga 395  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  67516 gttttatgttgataaattctcttatctaaattattgtttattagtattgctaatga 67571  T

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Target: scaffold0004; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 74299 - 74237
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaat 400  Q
    |||||||||||||| |||   |||||||||||||||||||||||| |||||||||||||||||    
T  74299 ttgttttatgttgacaaaatctcttatctaaattattgtttattagtattgctaatgatgaat 74237  T

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Target: scaffold0123 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 15621 - 15555
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||  |||||  ||||||||||||||||| | || ||||||||||||||||||||||||    
T  15621 tgttgataaattctcttacataaattattgtttattagttttactaatgatgaataaatgttgttat 15555  T

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Target: scaffold0121 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 18948 - 18878
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || ||||||||||||| ||||||||||    
T  18948 tttatgttgataaattctcttacttaaattattgtttattagttttactaatgatgaatagatgttgttat 18878  T

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Target: scaffold0213 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 17827 - 17757
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||||||| ||||||||| | || ||||||||||||| ||||||||||    
T  17827 tttatgttgataaattctcttacttaaattagtgtttattagttttactaatgatgaatagatgttgttat 17757  T

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Target: scaffold0056 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 15174 - 15100
Alignment:
Q  338 ttgttttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||||||  |||||  |||||||||||| |||| | || ||||||||||||  ||||||||||    
T  15174 ttgttttatgttgataaattctcttacttaaattattgttcattagttttactaatgatgaatcgatgttgttat 15100  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 188376 - 188419
Alignment:
Q  366 taaattattgtttattaatattgctaatgatgaataaatgttgt 409  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||    
T  188376 taaattactgtttattagtattgctaatgatgaatagatgttgt 188419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 3526 - 3456
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||| ||||||||  |||||  ||||||||||||||||| | || ||||||||| ||| ||||||||||    
T  3526 tttatgctgataaattctcttacttaaattattgtttattagttttactaatgatggatagatgttgttat 3456  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 61371 - 61305
Alignment:
Q  346 tgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||  |||||| ||||||||||||||||| | || |||| ||||||||  |||||||||    
T  61371 tgttgataaattctcttatttaaattattgtttattagttttactaaagatgaataggtgttgttat 61305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 25245 - 25175
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgttat 412  Q
    |||||||||||||||  |||||  ||| ||| ||||||||| | || ||||||||||||| ||||||||||    
T  25245 tttatgttgataaattctcttacttaagttactgtttattagttttactaatgatgaatagatgttgttat 25175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 823 - 892
Alignment:
Q  342 tttatgttgataaatcttcttatctaaattattgtttattaatattgctaatgatgaataaatgttgtta 411  Q
    |||||||||||||||  |||||  ||||||||||||||||| | || |||| ||||||||  ||||||||    
T  823 tttatgttgataaattctcttacttaaattattgtttattagttttactaaagatgaataggtgttgtta 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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