View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_21 (Length: 417)
Name: NF14060_low_21
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_21 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 959493 - 959759
Alignment:
| Q |
18 |
attttttatctttatttttgcttgtaaaaatatttactactaat----gttaatatattctcaaatgtagcttgtgctagtgggaactaatgctgcaatg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
959493 |
attttttatctttatttttgcttgtaaaaatatttactactaattaatgttaatatattctcaaatgtagcttgtgctagtgggaactaatgctgcaatg |
959592 |
T |
|
| Q |
114 |
ttaccccctcaactttactggcagtccatgcttcccaactctccaatgcctaaagccttcactaatctgctacaccctggtcagtatcatacaattttgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
959593 |
ttaccccctcaactttactggcagtccatgcttcccaactctccaatgccaaaagccttcactaatctgctacaccctggtcagtatcatacaattttgc |
959692 |
T |
|
| Q |
214 |
ttccacgtgttaaaaatgattaatgataatgtaattagaggtt-ataaccacataataaactgaatc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
959693 |
ttccacgtgttaaaaatgattaatgataatgtaattagaggttaataaccagataataaactgaatc |
959759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 947518 - 947821
Alignment:
| Q |
19 |
ttttttatctttatttttgcttgtaaaaatatttactactaatgttaatatattctcaaatgtagcttgtgctagtgggaactaatgctgcaatgttacc |
118 |
Q |
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|||||| |||||| || |||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||||| |
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| T |
947518 |
ttttttttctttacttctgcttgtaaaaatatttattactaatgttaagatattctcaaatgtaggttgtgctagtgggaactaatgctgaaatattacc |
947617 |
T |
|
| Q |
119 |
ccctcaactttactggcagtccatgcttcccaactctccaatgcctaaagccttcactaatctgctacaccctggtcagtatcatacaattttgcttcca |
218 |
Q |
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| T |
947618 |
acctcaactttactggaaatccatgcttaccaactctccaatgccaaaagctatcactaatctgctacaccctggttagtatcatacaattttacctcca |
947717 |
T |
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| Q |
219 |
cgtgttaaaaatgattaatgataatgtaattagaggtt-ataaccacataataaact----gaatcaatcaattgtttgtatgtcattaaccatgtagtt |
313 |
Q |
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| T |
947718 |
tgtgttaaaagtgattaatgataatgtaattagaggttaataaccacataataaactgatcgaatcaatcaattgtttttatgtcattaaccatgtaatt |
947817 |
T |
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| Q |
314 |
tttt |
317 |
Q |
| |
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|||| |
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| T |
947818 |
tttt |
947821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 967501 - 967803
Alignment:
| Q |
19 |
ttttttatctttatttttgcttgtaaaaatatttactactaatgttaatatattctcaaatgtagcttgtgctagtgggaactaatgctgcaatgttacc |
118 |
Q |
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|||||| |||||| || |||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| || | | ||| |
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| T |
967501 |
ttttttttctttacttctgcttgtaaaaatatttattactaatgttaagatattctcaaatgtaggttgtgttagtgggaactaatgctacagtatcacc |
967600 |
T |
|
| Q |
119 |
ccctcaactttactggcagtccatgcttcccaactctccaatgcctaaagccttcactaatctgctacaccctggtcagtatcatacaattttgcttcca |
218 |
Q |
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||||||||||||||| | ||||||||||| |||||||||||||| ||| || |||| |||||||||||||||||| |||||||| ||||||| | |||| |
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| T |
967601 |
acctcaactttactggaaatccatgcttccaaactctccaatgccaaaatccatcacaaatctgctacaccctggttagtatcatgcaattttacctcca |
967700 |
T |
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| Q |
219 |
cgtgttaaaaatgattaatgataatgtaattagaggtt-ataaccacataataaact----gaatcaatcaattgtttgtatgtcattaaccatgtagtt |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
967701 |
cgtgttaaaagtgattaatgataatgtaattagaggttaataaccacataataaactgatcgaatcaatcaattgtttttatgtcattaaccatgtagtt |
967800 |
T |
|
| Q |
314 |
ttt |
316 |
Q |
| |
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||| |
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| T |
967801 |
ttt |
967803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 974141 - 974290
Alignment:
| Q |
55 |
tactaatgttaatatattctcaaatgtagcttgtgctagtgggaactaatgctgcaatgttaccccctcaactttactggcagtccatgcttcccaactc |
154 |
Q |
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|||||||||||| ||||||||| ||||||||||| ||| || ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
974141 |
tactaatgttaaactattctcaattgtagcttgtggtaggggcaactaatgctgtaatgttacctcctcaactttactggaagtccatgcttcccaactc |
974240 |
T |
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| Q |
155 |
tccaatgcctaaagccttcactaatctgctacaccctggtcagtatcata |
204 |
Q |
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||||||||| |||||| ||||||||||||||||||||||| ||||||||| |
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| T |
974241 |
tccaatgccaaaagccatcactaatctgctacaccctggttagtatcata |
974290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 420885 - 420736
Alignment:
| Q |
55 |
tactaatgttaatatattctcaaatgtagcttgtgctagtgggaactaatgctgcaatgttaccccctcaactttactggcagtccatgcttcccaactc |
154 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||| | ||||||||||| | ||| |
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| T |
420885 |
tactaatgttaaaatattctcaaatgtagcttgtggtagtggcaactaatgctacaatgttacctcctcaactttactggaaatccatgcttccaacctc |
420786 |
T |
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| Q |
155 |
tccaatgcctaaagccttcactaatctgctacaccctggtcagtatcata |
204 |
Q |
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| T |
420785 |
tttgatgccaaaagccatcactaatctgctacaccctggttagtatcata |
420736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 941122 - 941284
Alignment:
| Q |
43 |
aaaaatatttactactaatgttaatatattctcaaatgtagcttgtgctagtgggaactaatgctgcaatgttaccccctcaactttactggcagtccat |
142 |
Q |
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|||| |||||| | ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| || || |||||| ||||||| ||||||| |
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| T |
941122 |
aaaagtatttattgctaatgttaatatgttctcaattgcagcttgtgctagtgggaactaatgctgcaatatttccacctcaatattactggaagtccat |
941221 |
T |
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| Q |
143 |
gcttcccaactctccaatgcctaaagccttcactaatctgctacaccctggtcagtatcatac |
205 |
Q |
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||||||||||||| ||||||| |||||| | ||| |||| ||| ||||||||||| ||||||| |
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| T |
941222 |
gcttcccaactcttcaatgccaaaagccattactgatcttctaaaccctggtcagcatcatac |
941284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 9686 - 9835
Alignment:
| Q |
55 |
tactaatgttaatatattctcaaatgtagcttgtgctagtgggaactaatgctgcaatgttaccccctcaactttactggcagtccatgcttcccaactc |
154 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||| | ||||||||||| | ||| |
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| T |
9686 |
tactaatgttaaaatattctcaaatgtagcttgtggtagtggcaactaatgctacaatgttacctcctcaactttactggaaatccatgcttccaacctc |
9785 |
T |
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| Q |
155 |
tccaatgcctaaagccttcactaatctgctacaccctggtcagtatcata |
204 |
Q |
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| ||||| |||||| ||||||||||||||||||||||| ||||||||| |
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| T |
9786 |
tttgatgccaaaagccatcactaatctgctacaccctggttagtatcata |
9835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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