View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_24 (Length: 313)
Name: NF14060_low_24
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 23456990 - 23456704
Alignment:
| Q |
20 |
agtatctcataataacatcatgtgatggcactgaaaattggggtagaacatcagcctcctttatctgttaaaaactagaatcttccatagaacacgaatc |
119 |
Q |
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| T |
23456990 |
agtatctcataataacatcatgtgatggcactgaaaattggggtagaacatcagcctcctttatctgtgaaaaactagaatcttccatagaacacgaatc |
23456891 |
T |
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| Q |
120 |
cgaattaattcgattgtttccatcatgaattggtttacatcttcagnnnnnnnnccttctgttgttgttgatgttgtcaattttagctgtcaagatcgtt |
219 |
Q |
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| T |
23456890 |
caaattaattcgattgtttccatcatgaattggtttacatcttcagtttttttttcttctgttgttgttgatgttgtcaattttagctgtcaagatcgtt |
23456791 |
T |
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| Q |
220 |
gttgttgtcaacgtcaccatctgatctgtcaaaactttgacgtccgcaattgaaccgtagatggtcgcgcttaaagccacgtctctg |
306 |
Q |
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| T |
23456790 |
gttgttgtcaacgtcaccatctgatctgtcaaaactttgacgtccgcaattaaaccgtagatggtcgcgcttaaagccacatctctg |
23456704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 30168236 - 30168188
Alignment:
| Q |
20 |
agtatctcataataacatcatgtgatggcactgaaaattggggtagaac |
68 |
Q |
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| T |
30168236 |
agtatctcataataacatcatgtgatggcaatggaaattggggtagaac |
30168188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 1220126 - 1220176
Alignment:
| Q |
98 |
aatcttccatagaacacgaatccgaattaattcgattgtttccatcatgaa |
148 |
Q |
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| T |
1220126 |
aatcttcaatagaacacaaatccgaattaattcgattgtttccgtcatgaa |
1220176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 13885994 - 13886027
Alignment:
| Q |
179 |
tgttgttgttgatgttgtcaattttagctgtcaa |
212 |
Q |
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| T |
13885994 |
tgttgttgttgatgttgtcaatcttagctgtcaa |
13886027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 31913709 - 31913668
Alignment:
| Q |
107 |
tagaacacgaatccgaattaattcgattgtttccatcatgaa |
148 |
Q |
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| T |
31913709 |
tagaacacaaatccgaattaattcgattgtttccatcatgaa |
31913668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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