View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14060_low_25 (Length: 308)

Name: NF14060_low_25
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14060_low_25
NF14060_low_25
[»] chr4 (2 HSPs)
chr4 (145-296)||(46776210-46776361)
chr4 (19-72)||(46776081-46776134)
[»] chr5 (2 HSPs)
chr5 (243-296)||(5151817-5151870)
chr5 (245-297)||(5152349-5152401)
[»] chr3 (1 HSPs)
chr3 (242-275)||(3917340-3917373)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 145 - 296
Target Start/End: Original strand, 46776210 - 46776361
Alignment:
Q  145 aacaagtatccctgtgtgcaattgcaaaaattaattttatcatctacatacaactgtaaagataaattattcgagtcggacataaccgagaatagtttca 244  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| |    
T  46776210 aacaagtatccctgcgtgcaattacaaaaattaattttatcatctacgtacaactgtaaagataaattattcgagtcggatataaccaagaatagtttta 46776309  T
Q  245 ttattttggtgtttcaatgtttccaaaccacctagttttctcttcaaaccta 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46776310 ttattttggtgtttcaatgtttccaaaccacctagttttctcttcaaaccta 46776361  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 46776081 - 46776134
Alignment:
Q  19 aattaaccatccacgattttgcagaattatttataaactattcacgcaattctg 72  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46776081 aattaaccattcacgattttgcagaattatttataaactattcacgcaattctg 46776134  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 5151817 - 5151870
Alignment:
Q  243 cattattttggtgtttcaatgtttccaaaccacctagttttctcttcaaaccta 296  Q
    ||||||||||||||||||| |||| ||||||| | |||||| |||| |||||||    
T  5151817 cattattttggtgtttcaaagttttcaaaccatcaagttttttcttaaaaccta 5151870  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 5152401 - 5152349
Alignment:
Q  245 ttattttggtgtttcaatgtttccaaaccacctagttttctcttcaaacctat 297  Q
    |||| |||||||||||| |||||||||||||||  ||| |||| |||||||||    
T  5152401 ttatattggtgtttcaaagtttccaaaccacctcatttactctccaaacctat 5152349  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 3917373 - 3917340
Alignment:
Q  242 tcattattttggtgtttcaatgtttccaaaccac 275  Q
    |||||||||||||||||||| |||||||||||||    
T  3917373 tcattattttggtgtttcaaagtttccaaaccac 3917340  T

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