View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_28 (Length: 248)
Name: NF14060_low_28
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 16843619 - 16843850
Alignment:
| Q |
17 |
atattcttagatataagaaaataaacactatattatgtgttgttgcagaggaagttcatttctttatttgctttctagatctgttacttgtcactgtaga |
116 |
Q |
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| T |
16843619 |
atattcttagatataagaaaataaacactatattatgtgttgttgcagaggaagttcatttctttatttgctttctagatctgttacttgtcactgtaga |
16843718 |
T |
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| Q |
117 |
acttataatttggtgatcgtaaattcttaatttgagttgaggactcgaggccttggttttttgaagaaatggctgtataagatatttgaaattagttacg |
216 |
Q |
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| T |
16843719 |
acttataatttggtgatcgtaaattcttaatttgagttgaggactcgaggccttggttttttgaagaaatggctgtataagatatttgaaattagttacg |
16843818 |
T |
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| Q |
217 |
ctgtaaaagtatgatgctgtgttttctcactc |
248 |
Q |
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| T |
16843819 |
ctgtaaaagtatgatgctgtgttttctcactc |
16843850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 24210885 - 24211117
Alignment:
| Q |
17 |
atattcttagatataagaaaataaacactatat----tatgtgttgttgcagaggaagttcatttctttatttgctttctagatctgttacttgtcactg |
112 |
Q |
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| T |
24210885 |
atattctgagaaataagaaaataaacactgtatattatatgtgttgttgcaaaggaagttcatttctttatttggtctctagatctgttacttgtcactg |
24210984 |
T |
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| Q |
113 |
tagaacttataatttggtgatcgtaaattcttaatttgagttgaggactcgaggccttggttttttgaagaaatggctgtataagatatttgaaattagt |
212 |
Q |
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| T |
24210985 |
tagaacttataatttggtgatcgtaaattctgaatttgagtcgaggactcgagaccttggttttttgaaggaatgactgtatgagttatttgatattaga |
24211084 |
T |
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| Q |
213 |
tacgctgtaaaagtatgatgctgtgttttctca |
245 |
Q |
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| T |
24211085 |
taagctgtaaaagtatgatgttgtgttttctca |
24211117 |
T |
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