View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_3 (Length: 644)
Name: NF14060_low_3
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 97 - 566
Target Start/End: Original strand, 6358531 - 6359020
Alignment:
| Q |
97 |
ataccatttgtgacgtcttattatcccatttctttgttatttttctaatcatgattttatcatatagctgcatgctt-gcccaattcagtgttggctttt |
195 |
Q |
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| T |
6358531 |
ataccatttgtgacgtcttattatcccatttctttgttatttttctaatcatgattttatcatatagctgcatgctttgcccaattcagtgttggctttt |
6358630 |
T |
|
| Q |
196 |
gagggaaagatagcatcagtaggtgatttgtagcat-----caaaggaactgaggtatgtgttttattttt--------tatctcgtctaagtagaagtt |
282 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
6358631 |
gagggaaagatagcatcagtaggtgatttgcagcatgtacccaaaggaactgaggtatgtgttttttttttattttttttatctcgtctaagtagaagtt |
6358730 |
T |
|
| Q |
283 |
accatttgcaataataagttcacttatagagcaagaaatgtcattcaaagattatttatgcatactcagcaaaacttggattcgagacctttgnnnnnnn |
382 |
Q |
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| T |
6358731 |
accatttgcaataataagttcacttatagagcaagaaatgtcattcaaagattatttatgcatactcagcaaaacttggattcgagaccttttttttttt |
6358830 |
T |
|
| Q |
383 |
nnnnnn------cttgatctgtctaaactgaagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaacagataaagcaaatttc |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6358831 |
tttttttttcttcttgatctgtctaaactgaagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaatagataaagcaaatttc |
6358930 |
T |
|
| Q |
477 |
aaccggaataaaatcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttctgactataacttgtacctgc |
566 |
Q |
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| T |
6358931 |
aaccggaataaaatcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttctgactataacttgtacctgc |
6359020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 6358418 - 6358491
Alignment:
| Q |
18 |
ggatttacacattttgttttagatacggttatgatgtttttgtggatttgactctctcgtaatgtatctctgaa |
91 |
Q |
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| T |
6358418 |
ggatttacacattttgttttagatacggttatgatgtttttgtggatttgactctctcgtaatgtatctctgaa |
6358491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 607 - 638
Target Start/End: Original strand, 6359029 - 6359060
Alignment:
| Q |
607 |
ctttttatgtcttaccctttctgtatattctt |
638 |
Q |
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| T |
6359029 |
ctttttatgtcttaccctttctgtatattctt |
6359060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 407 - 560
Target Start/End: Complemental strand, 32857631 - 32857478
Alignment:
| Q |
407 |
aagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaacagataaagcaaatttcaaccggaataaaatcactttcaaaagaagc |
506 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||| | |||||||| || | | ||||||| |
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| T |
32857631 |
aagatggaaaagcatttcaatgccaagaatgtgggttagttagagacaaggaagagataaagcaaattgcaactgaaataaaatttctattagaagaagc |
32857532 |
T |
|
| Q |
507 |
ttctaatccttcttctagtaacaatatcatttaacatttctgactataacttgt |
560 |
Q |
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|||||| |||||||| | | || |||| ||||||||||||||||| ||||||| |
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| T |
32857531 |
ttctaagccttcttccaatggcagtatcctttaacatttctgactagaacttgt |
32857478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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