View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_5 (Length: 621)
Name: NF14060_low_5
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 82 - 565
Target Start/End: Original strand, 38566452 - 38566924
Alignment:
| Q |
82 |
ttgctacaacaattgtcacccatctcaggactgtcaccaatgctaaacatgcttggttattcacaccttgaatggtctcacaactgaataatgtga--tt |
179 |
Q |
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| T |
38566452 |
ttgctacaacaattgttacccatctcaggactgtcaccaatgctaaacatgcttggttattcaca-----------------actgaataatgtgagatt |
38566534 |
T |
|
| Q |
180 |
gcagttgctcttcgaagtagagaaagtcccattgaatttgctgaactccatgagaaactcatggactttgataggttgttgcatcgtgaggaaccaacta |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38566535 |
gcagttgctcttcgaagtagagaaagtcccattgaatttgctgaactccatgagaaacccatggactttgataggttgctgcatcgtgaggaaccaacta |
38566634 |
T |
|
| Q |
280 |
tgtcatat----tctctagttgttactccaaatgcagcaacgagatcctgcggccaacaacatcagcctaaacagacctaatcatactgcaagaaattgc |
375 |
Q |
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|||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38566635 |
tgtcatatatattctctagttgttactgcaaatgcagcaacaagatcctgcggccaacaacatcagccaaaacagacctaatcatactgcaagaaattgc |
38566734 |
T |
|
| Q |
376 |
ttcaaaatcaagggttatcctaagagaaatggaggcaaaacacaagctaacacagctgctcgccaatatgcaccacatcatcctaactggatcattgaca |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38566735 |
ttcaaaatcaagggttatcctaagagaaatggaggcaaaacagaagctaacacagctgctcgccaatatgcaccacatcatcctaactggatcattgaca |
38566834 |
T |
|
| Q |
476 |
caggggcatctcatcacattgctcaagatttttagcatctcactttggctaactcctaccccggctcagacaaagtcttagttggtgatg |
565 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38566835 |
gaggggcatctcatcacattgctcaagatttttagcatctcactttggctaattcctaccccggctcagacaaagtcttagttggtgatg |
38566924 |
T |
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