View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14060_low_6 (Length: 578)
Name: NF14060_low_6
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14060_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 562
Target Start/End: Original strand, 38811808 - 38812367
Alignment:
| Q |
11 |
taatactagtaaggaagctgcaaagcaagggcttatgatcatg--------gaaatgagaggttctttggccattctcaactttccacatgaacattttc |
102 |
Q |
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| T |
38811808 |
taatactagtaaggaagctgcaaaacaagggcttatgatcatgctgcttttgaaatgagaggttctttggccattctcaactttccacatgaacattttc |
38811907 |
T |
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| Q |
103 |
cttgcaatgtggtttataattcttctaagtcatcttcttcatccaattcaacgccatcattatcatcggcatcaccaccaccatcatggattaaatcaga |
202 |
Q |
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| T |
38811908 |
cttgcaatgtggtttataattcttctaagtcatcttcttcatccaattcaacgccatcattatcatcggcatcaccaccaccatcatggattaaatcaga |
38812007 |
T |
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| Q |
203 |
gcttggtgaacaagttctagattttgagtattgggatgaaacattgttagaggaactcttggattttgagagcatcctcaaccaaaacttgttcaaggag |
302 |
Q |
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| T |
38812008 |
gcttggtgaacaagttctagattttgagtattgggatgaaacattgttagaggaactcttggattttgagagcatcctcaaccaaaacttgttcaaggag |
38812107 |
T |
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| Q |
303 |
gagttacttgatttaagcatgagtgatcttgttctgtttttaccccgaaatatatgtttagtacttaatgtcaattaagtactttataagagagttgttt |
402 |
Q |
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| T |
38812108 |
gagttacttgatttaagcatgagtgatcttgttctgtttttaccccgaaatatatgtttagtacttaatgccaattaagtactttataagagaggagttt |
38812207 |
T |
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| Q |
403 |
gttgatacacaatgtttattccaatttgataaataagctaaaacctactccttcggtccctttttataaggatccattctgcgggtgaaaatgatgctta |
502 |
Q |
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| T |
38812208 |
gttgatacacaatgtttattccaatttgataaataagctaaaacctactccttcggtccctttttataaggatccattctgcgggtgaaaatgatgctta |
38812307 |
T |
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| Q |
503 |
tataaatataagacggagggtgtaaaatataatgagaaccaagttttgttgtgacaagtg |
562 |
Q |
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| T |
38812308 |
tataaatataagacggagggtgtaaaatataatgagaaccaagttttgttgtgacaagtg |
38812367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 54 - 344
Target Start/End: Original strand, 38809786 - 38810064
Alignment:
| Q |
54 |
gaaatgagaggttctttggccattctcaactttccacatgaacatt---ttccttgcaatgtggtttataattcttctaagtcatcttcttcatccaatt |
150 |
Q |
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| T |
38809786 |
gaaatgagaggttcttcagctattcttaactttcctcatgaacattattttccttgcagtgtggtatataacccttctaagccgtcttcttcctccaatt |
38809885 |
T |
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| Q |
151 |
caacgccatcattatcatcggcatcaccaccaccatcatggattaaatcagagcttggtgaacaagttctagattttgagtattgggatgaaacattgtt |
250 |
Q |
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| T |
38809886 |
caacctcatcatcatcatct---------------tcaaaggttaaatcggaacttgttgaacaagttatagagtttgagtatttggatgaaaaattatt |
38809970 |
T |
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| Q |
251 |
agaggaactcttggattttgagagcatcctcaaccaaaacttgttcaaggaggagttacttgatttaagcatgagtgatcttgttctgttttta |
344 |
Q |
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| T |
38809971 |
agaggaactcttggattttgagagcatcatcaaccaggacttgttcaagtaggagttacttgatttaagcatgagtgattttgttctgttttta |
38810064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 193 - 313
Target Start/End: Original strand, 38822847 - 38822967
Alignment:
| Q |
193 |
ttaaatcagagcttggtgaacaagttctagattttgagtattgggatgaaacattgttagaggaactcttggattttgagagcatcctcaaccaaaactt |
292 |
Q |
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| T |
38822847 |
ttaaatcggagcttggtgaacaaattatagagtttgagtatttggatgaaaaattattagaggaactcttggatcctgagaataccatcaataacaactg |
38822946 |
T |
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| Q |
293 |
gttcaaggaggagttacttga |
313 |
Q |
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| T |
38822947 |
gttcaagtaggagttacttga |
38822967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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