View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14060_low_8 (Length: 543)

Name: NF14060_low_8
Description: NF14060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14060_low_8
NF14060_low_8
[»] chr2 (6 HSPs)
chr2 (251-524)||(31160213-31160483)
chr2 (16-130)||(31159980-31160096)
chr2 (64-109)||(12470914-12470959)
chr2 (64-109)||(29968628-29968673)
chr2 (64-109)||(42543455-42543500)
chr2 (64-109)||(44437738-44437783)
[»] chr7 (4 HSPs)
chr7 (64-109)||(34745967-34746012)
chr7 (63-107)||(47155188-47155232)
chr7 (64-109)||(17759493-17759538)
chr7 (63-92)||(30664805-30664834)
[»] chr5 (4 HSPs)
chr5 (64-109)||(28411896-28411941)
chr5 (80-109)||(1525864-1525893)
chr5 (64-109)||(9121095-9121140)
chr5 (62-99)||(40954048-40954085)
[»] chr1 (5 HSPs)
chr1 (70-110)||(2001149-2001189)
chr1 (70-109)||(50806887-50806926)
chr1 (64-109)||(43240396-43240441)
chr1 (69-109)||(28528575-28528615)
chr1 (345-449)||(50126830-50126934)
[»] chr4 (4 HSPs)
chr4 (70-109)||(52227918-52227957)
chr4 (64-110)||(49738567-49738613)
chr4 (61-106)||(4136757-4136802)
chr4 (64-109)||(31961283-31961328)
[»] chr8 (3 HSPs)
chr8 (65-110)||(37808215-37808260)
chr8 (64-109)||(39953281-39953326)
chr8 (63-111)||(36829099-36829147)
[»] chr3 (1 HSPs)
chr3 (64-109)||(35033366-35033411)
[»] chr6 (1 HSPs)
chr6 (46-98)||(21351836-21351888)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 251 - 524
Target Start/End: Original strand, 31160213 - 31160483
Alignment:
Q  251 caagaactttagtgactacccatttgaagatacattccaaaaaacaaaactttaactcaaaaataactaccttggataattacatctcgagggcttccat 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  31160213 caagaactttagtgactacccatttgaagatacattccaaaaaacaaaactttaactcaaatataactaccttggaagattacatctcgagggcttccat 31160312  T
Q  351 ctatacttgatataatctttatcagttctaccatttccaagacaatcaaaaccttgaccaatgaaaggacagtcttttgaagcatcatagagagggtagg 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31160313 ctatacttgatataatctttatcagttctaccatttccaagacaatcaaaaccttgaccaatgaaaggacagtcttttgaagcatcatagagagggtaag 31160412  T
Q  451 agaaggtagtggaatcatcatcatcaatgacccagtttccgtgagaataatcacatggttgttgtagagaaagt 524  Q
    ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||    
T  31160413 agaaggtagtggaatcatcatcat---tgacccagtttccttgagaataatcacatggttgttgtagagaaagt 31160483  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 31159980 - 31160096
Alignment:
Q  16 caaatcggttgaaacttcacaccaatatcatacaacaacgag---tatgttttatctcactaaatgaggtcggctacatgaatcaaacaacgccataagt 112  Q
    |||||||||| ||| |||||||||||||||||||||||| |    || |||||||||||||||||  ||||||| ||||||||||||||||| |||||||    
T  31159980 caaatcggttaaaaattcacaccaatatcatacaacaacaacaactaagttttatctcactaaatt-ggtcggcaacatgaatcaaacaacgtcataagt 31160078  T
Q  113 catatcgctcagtcatat 130  Q
    |||| |||||| ||||||    
T  31160079 cataacgctcaatcatat 31160096  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 12470914 - 12470959
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| ||||||||| ||||||||||||||| ||||| ||||||||    
T  12470914 ttatcccactaaatggggtcggctacatgaagcaaacgacgccata 12470959  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 29968628 - 29968673
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| ||  |||||||||||||||||||||||||||||    
T  29968628 ttatcccactaagtggagtcggctacatgaatcaaacaacgccata 29968673  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 42543500 - 42543455
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| || || |||||||||||||||||||||||||||    
T  42543500 ttatcccactaagtggggccggctacatgaatcaaacaacgccata 42543455  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 44437738 - 44437783
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| || |||||||||||||||| |||||||||||||    
T  44437738 ttatcccactaagtggggtcggctacatgaattaaacaacgccata 44437783  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 34746012 - 34745967
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||    
T  34746012 ttatcccactaagtggggtcggctacatgaatcaaacaacgccata 34745967  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 47155188 - 47155232
Alignment:
Q  63 tttatctcactaaatgaggtcggctacatgaatcaaacaacgcca 107  Q
    |||||| |||||| || ||||||||||||||||||||||||||||    
T  47155188 tttatcccactaagtggggtcggctacatgaatcaaacaacgcca 47155232  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 17759538 - 17759493
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| || |||||||||||||||||||||||| |||||    
T  17759538 ttatcccactaagtggggtcggctacatgaatcaaacaacaccata 17759493  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 92
Target Start/End: Complemental strand, 30664834 - 30664805
Alignment:
Q  63 tttatctcactaaatgaggtcggctacatg 92  Q
    ||||||||||||||||||||||||||||||    
T  30664834 tttatctcactaaatgaggtcggctacatg 30664805  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 28411941 - 28411896
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||    
T  28411941 ttatcccactaagtggggtcggctacatgaatcaaacaacgccata 28411896  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 1525893 - 1525864
Alignment:
Q  80 ggtcggctacatgaatcaaacaacgccata 109  Q
    ||||||||||||||||||||||||||||||    
T  1525893 ggtcggctacatgaatcaaacaacgccata 1525864  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 9121095 - 9121140
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| |||||||||||||||||||||||| | ||||||    
T  9121095 ttatcccactaagtgaggtcggctacatgaatcaaacgatgccata 9121140  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 40954085 - 40954048
Alignment:
Q  62 ttttatctcactaaatgaggtcggctacatgaatcaaa 99  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  40954085 ttttatctcactaaatgatgtcagctacatgaatcaaa 40954048  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 2001149 - 2001189
Alignment:
Q  70 cactaaatgaggtcggctacatgaatcaaacaacgccataa 110  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  2001149 cactaagtgaggtctgctacatgaatcaaacaacgccataa 2001189  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 50806926 - 50806887
Alignment:
Q  70 cactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  50806926 cactaaatggggtcggttacatgaatcaaacaacgccata 50806887  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 43240396 - 43240441
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| |||||||||||||||||||||||  ||||||||    
T  43240396 ttatcccactaagtgaggtcggctacatgaatcaaatgacgccata 43240441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 28528615 - 28528575
Alignment:
Q  69 tcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||||| || ||||||||||||||||||||| ||||||||    
T  28528615 tcactaagtggggtcggctacatgaatcaaacgacgccata 28528575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 50126934 - 50126830
Alignment:
Q  345 ttccatctatacttgatataatctttatcagttctaccatttccaagacaatcaaaaccttgaccaatgaaaggacagtcttttgaagcatcatagagag 444  Q
    ||||||||||| |||| |||||||| ||| | ||| |||||||  ||||||| ||| || ||  | || |||||||||||  |||| |||||||| ||||    
T  50126934 ttccatctatatttgagataatcttgatctggtctcccatttctgagacaattaaatccctgcactataaaaggacagtcccttgaggcatcataaagag 50126835  T
Q  445 ggtag 449  Q
    |||||    
T  50126834 ggtag 50126830  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 52227918 - 52227957
Alignment:
Q  70 cactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  52227918 cactaaatgaggtcggctacataaatcaaacgacgccata 52227957  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 49738567 - 49738613
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccataa 110  Q
    ||||| ||||||||| ||||||||||||| |||||||| ||||||||    
T  49738567 ttatcccactaaatggggtcggctacatggatcaaacaccgccataa 49738613  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 4136757 - 4136802
Alignment:
Q  61 gttttatctcactaaatgaggtcggctacatgaatcaaacaacgcc 106  Q
    ||||||||||||||| |  ||||||||||||| |||||||||||||    
T  4136757 gttttatctcactaagtagggtcggctacatggatcaaacaacgcc 4136802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 31961283 - 31961328
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| |||||||||||||||||||||||| ||| ||||    
T  31961283 ttatcccactaagtgaggtcggctacatgaatcaaacgacgtcata 31961328  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 37808215 - 37808260
Alignment:
Q  65 tatctcactaaatgaggtcggctacatgaatcaaacaacgccataa 110  Q
    |||| ||||||||| ||||||||||||||||||||| || ||||||    
T  37808215 tatcccactaaatggggtcggctacatgaatcaaactacaccataa 37808260  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 39953281 - 39953326
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| |||||| || |||||||||||||||||||||||| |||||    
T  39953281 ttatcccactaagtggggtcggctacatgaatcaaacaactccata 39953326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 36829099 - 36829147
Alignment:
Q  63 tttatctcactaaatgaggtcggctacatgaatcaaacaacgccataag 111  Q
    |||||||||| ||||  ||||||||||||||||||||| || |||||||    
T  36829099 tttatctcacaaaatatggtcggctacatgaatcaaacgacaccataag 36829147  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 35033411 - 35033366
Alignment:
Q  64 ttatctcactaaatgaggtcggctacatgaatcaaacaacgccata 109  Q
    ||||| ||||| ||||||||||||||||| |||||| |||||||||    
T  35033411 ttatcccactagatgaggtcggctacatggatcaaataacgccata 35033366  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 21351836 - 21351888
Alignment:
Q  46 tacaacaacgagtatgttttatctcactaaatgaggtcggctacatgaatcaa 98  Q
    |||||||||||  | || |||||||||||| |||||||||||||||| |||||    
T  21351836 tacaacaacgacgaagtcttatctcactaactgaggtcggctacatggatcaa 21351888  T

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