View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_high_17 (Length: 315)
Name: NF14061_high_17
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 3110692 - 3110980
Alignment:
| Q |
16 |
tattgttggacaacactctcttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaacttt |
115 |
Q |
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| T |
3110692 |
tattgttggacaacactctcttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaacttt |
3110791 |
T |
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| Q |
116 |
tgatgaattttgcattttgtaatcatcttcaaatgattcattttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatg |
215 |
Q |
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| T |
3110792 |
tgatgaattttgcattttgtaatcatcttcaaatgattcattttctaatactgactttgctggttcaagaaacaataactgtccctttccaggattgatg |
3110891 |
T |
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| Q |
216 |
ctacttagagatatcacaagcatatcattatcattcaaacctaattctcttcggaccgatttgcgcaacaacttcctcttctcattcat |
304 |
Q |
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| T |
3110892 |
ctacttagagatatcacaagcatatcattatcattcaaacctaattctcttcggactgatttgcgcaacaacttcctcttctcattcat |
3110980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 36 - 300
Target Start/End: Complemental strand, 26270640 - 26270376
Alignment:
| Q |
36 |
ttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaacttttgatgaattttgcattttgt |
135 |
Q |
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| T |
26270640 |
ttgctattgctatccttcatcattggcaacaactttctaagatgatgtcttctagccaaagtataaatatcttcaacttttgatgaattttgcattttgt |
26270541 |
T |
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| Q |
136 |
aatcatcttcaaatgattcattttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatgctacttagagatatcacaag |
235 |
Q |
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| T |
26270540 |
tatcatcttgaaatgattcattttctaatactgactttgctgattcaagaaacaataactgaccctttccaggattgatgctacttagagatatcacaag |
26270441 |
T |
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| Q |
236 |
catatcattatcattcaaacctaattctcttcggaccgatttgcgcaacaacttcctcttctcat |
300 |
Q |
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| T |
26270440 |
catatcattatcattcaaacctaattctctacggactgatgcacgcaataacttcctcttttcat |
26270376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 304
Target Start/End: Complemental strand, 44063093 - 44062947
Alignment:
| Q |
158 |
ttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatgctacttagagatatcacaagcatatcattatcattcaaacct |
257 |
Q |
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| T |
44063093 |
ttctactactgagcttgctgattcaagaagcaatagctggccctttccggggttgatgctacttagagatattacaagcatatcattgtcagttaatccc |
44062994 |
T |
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| Q |
258 |
aattctcttcggaccgatttgcgcaacaacttcctcttctcattcat |
304 |
Q |
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| T |
44062993 |
atttcttttcggaccgattctcgcaacaactgccttttctcaatcat |
44062947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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