View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_high_23 (Length: 244)
Name: NF14061_high_23
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 26 - 228
Target Start/End: Complemental strand, 5386221 - 5386019
Alignment:
| Q |
26 |
agggaccaacaaaataattaaacctattgtaaatatagaactcatgtagttgaaaatttcccttaaaaatacttactgtcgaaaacttgaagggaatatt |
125 |
Q |
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| T |
5386221 |
agggaccaacaaaataattaaacctattgtaaatatagaactcatgtagttgaaaatttcccttaaaaatacttactgtcgaaaacttgaagggaatatt |
5386122 |
T |
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| Q |
126 |
ataaaatgggattnnnnnnntctcatgagagtcttatatttagggatgcagcagcaaaatttaattattatccatgagaaatataaatcaacacattctt |
225 |
Q |
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| T |
5386121 |
ataaaatgggataaaaaaaatctcatgagagtcttatatttagggatgcagcagcaaaatttaattattatccatgagaaatataaatcaacacattctt |
5386022 |
T |
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| Q |
226 |
ttt |
228 |
Q |
| |
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||| |
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| T |
5386021 |
ttt |
5386019 |
T |
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