View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14061_high_4 (Length: 558)
Name: NF14061_high_4
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_high_4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 261 - 558
Target Start/End: Complemental strand, 28665786 - 28665483
Alignment:
| Q |
261 |
atatcatgatgcaaaatagctaagaatgtataaagtggaatgcacaaacttgctaatccatgtattgtaatcaatgttacattatatataaatatttaaa |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28665786 |
atatcatgatgcaaaatagctaagaatgtataaagtggaatgcacaaacttgctaatccatgtattgtaatcaatgttacattatatatgaatatttaaa |
28665687 |
T |
|
| Q |
361 |
ctttgtttactctttctgtctctgctatgttctttcttttctaaattttggccagcaaaggaataaaacattagtttaattcaatgtt-aatgt-----t |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
28665686 |
ctttgtttactctttctgtctctgctatgttctttctcttctaaattttggccagcaaaggaataaaacattagtttaattcaatgttaaatgtaaaaat |
28665587 |
T |
|
| Q |
455 |
tacacttatatatattgatcgttacgaagaactagtacatcaaagtggcatagaaaaaagagtgaataattaaaaatagtaaggcaaactcatagtataa |
554 |
Q |
| |
|
|| ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
28665586 |
tatttatatatatattgatagatacaaagaactagtacatcaaagtggcatagaaaaaagagtgaattattaaaaatagtaaggcaaactcatagactaa |
28665487 |
T |
|
| Q |
555 |
tcta |
558 |
Q |
| |
|
|||| |
|
|
| T |
28665486 |
tcta |
28665483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 28666034 - 28665811
Alignment:
| Q |
19 |
cctagtcctcaaaacaatgcaaaaaa-tatgcagttacatgccttggattgatttcttcaagtaagaaatgtaagaagctaatgatctcatatggtgcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28666034 |
cctagtcctcaaaacaatgcaaaaaaatatgcagttacatgccttggattgatttcttcaagtaagaaatgtaagaagctaatgatctcatatggtgcta |
28665935 |
T |
|
| Q |
118 |
ttggatatttgaagaaacttactgagatggatactccaggtgctaaaaagttacatgagagattggaaagagggaaattaagaagtttgtttggtaagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28665934 |
ttggatatttgaagaaacttactgagatggatactccaggtgctaaaaggttacatgagagattggaaagagggaaattaagaagtttgtttggtaagaa |
28665835 |
T |
|
| Q |
218 |
atagtgtaaaaaagtgttgcatcc |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28665834 |
atagtgtaaaaaagtgttgcatcc |
28665811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 12484107 - 12483916
Alignment:
| Q |
19 |
cctagtcctcaaaacaatgc-aaaaaatatgcagttacatgccttggattgatttcttcaagtaagaaatgtaagaagctaatgatctcatatggtgcta |
117 |
Q |
| |
|
|||||||| ||||||| ||| |||||||| |||||| |||||||||| ||||||| |||||||||||||| | | ||||| |||||||| || | |
|
|
| T |
12484107 |
cctagtccacaaaacactgcgaaaaaatacgcagtttgttgccttggatcactttcttcttgtaagaaatgtaagcggttgatgatatcatatggagcaa |
12484008 |
T |
|
| Q |
118 |
ttggatatttgaagaaacttactgagatggatactccaggtgctaaaaagttacatgagagattggaaagagggaaattaagaagtttgttt |
209 |
Q |
| |
|
| || ||||||||||| |||| ||| || || | |||||| ||||||||||| | ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
12484007 |
tagggtatttgaagaagcttattgacatagagattccaggagctaaaaagttgcgtgaaagattggaaagagggaaattgagaagtttgttt |
12483916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University