View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_high_6 (Length: 455)
Name: NF14061_high_6
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 144 - 441
Target Start/End: Complemental strand, 32653335 - 32653038
Alignment:
| Q |
144 |
atgcaaattcttctatttcattttgagtaaaaaatgtaagctgaacccaatatcaaagcaaaccttgagggttgcggtggcaacaatatcacaaaactca |
243 |
Q |
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| T |
32653335 |
atgcaaattcttctatttcattttgagtaaaaaatgtaagctgaacccaatatcaaagcaaaccttgagggttgcggtggcaacaatatcacaaaactca |
32653236 |
T |
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| Q |
244 |
aatggatcggcaagcacagactcggcaacaaacccaagaatatgagtcatatccatcatnnnnnnngcacctacttcatctgctatctttccttgcataa |
343 |
Q |
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| T |
32653235 |
aatggatcggcaagcacagactcggcaacaaacccaagaatatgagtcatatccatcataaaaaaagcacctacttcatctgctatctttccttgcataa |
32653136 |
T |
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| Q |
344 |
aagatgcaattagtttatcgcaaggaataaaatcacattgtatatagaagcagatgatgaagattaaaataaacatacttttctaatgcgagaataat |
441 |
Q |
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| T |
32653135 |
aagatgcaattagtttatcgcaaggaataaaatcacattgtatacagaagcagatgatgaagattaaaataaacatacttttctaatgcgagaataat |
32653038 |
T |
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Back To:
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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 44146951 - 44147024
Alignment:
| Q |
28 |
cccgtgcacggaacctttcttgaagaatatcatgccacctcctggacctcttgtagactggaggaagtgttgca |
101 |
Q |
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| T |
44146951 |
cccgtgcacggattctttcttgaagaatatcataccacctctaggacctatcaaagactggaggaagtattgca |
44147024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 5750848 - 5750901
Alignment:
| Q |
42 |
ctttcttgaagaatatcatgccacctcctggacctcttgtagactggaggaagt |
95 |
Q |
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| T |
5750848 |
ctttcttgaagaatatcataccacctctaggacctctcaaagactggaggaagt |
5750901 |
T |
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