View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14061_high_9 (Length: 433)

Name: NF14061_high_9
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14061_high_9
NF14061_high_9
[»] chr7 (21 HSPs)
chr7 (2-419)||(1551407-1551824)
chr7 (276-416)||(1087846-1087986)
chr7 (287-419)||(1105171-1105303)
chr7 (13-129)||(1087989-1088105)
chr7 (249-419)||(2320223-2320393)
chr7 (282-419)||(1595267-1595404)
chr7 (282-419)||(1603591-1603728)
chr7 (319-419)||(1607285-1607385)
chr7 (353-419)||(1542497-1542563)
chr7 (277-373)||(1542277-1542373)
chr7 (47-86)||(2329111-2329150)
chr7 (339-419)||(1558205-1558285)
chr7 (146-222)||(2336853-2336929)
chr7 (302-350)||(3852374-3852422)
chr7 (47-86)||(2337010-2337049)
chr7 (386-419)||(1087699-1087732)
chr7 (47-84)||(1105362-1105399)
chr7 (47-84)||(1542191-1542228)
chr7 (47-84)||(1595458-1595495)
chr7 (47-84)||(1603782-1603819)
chr7 (281-350)||(3956417-3956486)
[»] scaffold0491 (2 HSPs)
scaffold0491 (249-416)||(6906-7073)
scaffold0491 (276-419)||(1965-2107)
[»] chr8 (5 HSPs)
chr8 (249-416)||(18724413-18724580)
chr8 (268-416)||(18750084-18750232)
chr8 (276-419)||(18740086-18740229)
chr8 (276-419)||(18745050-18745193)
chr8 (22-84)||(18749856-18749918)
[»] chr3 (1 HSPs)
chr3 (47-84)||(29748407-29748444)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 2 - 419
Target Start/End: Original strand, 1551407 - 1551824
Alignment:
Q  2 agattatactggcttaaaagaagttgttgaaaatttcgaatcatggaagggatttcaccactaatgaggttgtaactgaggtcaatgttagttttgtaat 101  Q
    |||||||  |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  1551407 agattattatggcttaaaagaagttgtcgaaaatttccaatcatggatgggatttcaccactaatgaggttgtaactgaggtcaatggaagttttgtaat 1551506  T
Q  102 ttgtcaatgtaaaaaactcggaaggaaggtaaccactgagtgagttgtgagaaatgtcaagggtttttaatagaaggatatttgtaaaggaaattggaaa 201  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  1551507 ttgtcaatgtaaaaaaatcggaaggaaggtaaccaatgagtgagttgtgagaaatgtcaagggtttctaatagagggatatttgttaaggaaattggaaa 1551606  T
Q  202 ggttccaccgatggagttgtttttcaatatcaacacttccaagtgttttaattgaccgaagttaggtggaaggatacctgtgagaaaattatatgaaata 301  Q
    |||||| ||||||||||||||||| || |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1551607 ggttcctccgatggagttgttttttaacatcaacacttgcaacttttttaattgaccgaagttaggtggaaggatacctgtgagaaaattatatgcaata 1551706  T
Q  302 tcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaattaatacagttagatttttcaagaacc 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||| | |||||||||||||     
T  1551707 tcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagatttaatgtagtgatatttttcaagaaca 1551806  T
Q  402 ccaactcaagaggaatgg 419  Q
    | ||||||||||||||||    
T  1551807 ctaactcaagaggaatgg 1551824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 276 - 416
Target Start/End: Complemental strand, 1087986 - 1087846
Alignment:
Q  276 tacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1087986 tacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccgttaagtctattgtgagatagaat 1087887  T
Q  376 taatacagttagatttttcaagaaccccaactcaagaggaa 416  Q
    ||||  ||| | |||||||||||||  ||||||||||||||    
T  1087886 taatgtagtgatatttttcaagaacttcaactcaagaggaa 1087846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 1105303 - 1105171
Alignment:
Q  287 aaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaattaatacagtta 386  Q
    |||||||  ||||| |||| ||||  ||||| ||| ||||||| || | ||||||| ||||||||||||||||||||||||||||||  ||||| ||| |    
T  1105303 aaattatgggaaatgtcaaggtattgtaattgtgtaagatttgaaacaaaaataggaaagtttccattgagtctattgtgagatagatctaatatagtga 1105204  T
Q  387 gatttttcaagaaccccaactcaagaggaatgg 419  Q
    |||| ||||||||||||||||||||||||||||    
T  1105203 gattcttcaagaaccccaactcaagaggaatgg 1105171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 1088105 - 1087989
Alignment:
Q  13 gcttaaaagaagttgttgaaaatttcgaatcatggaagggatttcaccactaatgaggttgtaactgaggtcaatgttagttttgtaatttgtcaatgta 112  Q
    |||||||| ||||||| ||||||||| || |||||||||||||||||||||||||| |||| |||| |||||||||  ||||| | ||||||| |||| |    
T  1088105 gcttaaaataagttgtcgaaaatttccaaacatggaagggatttcaccactaatgaagttgcaacttaggtcaatggaagtttcgaaatttgttaatgaa 1088006  T
Q  113 aaaaactcggaaggaag 129  Q
    ||||| | |||||||||    
T  1088005 aaaaaattggaaggaag 1087989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 419
Target Start/End: Complemental strand, 2320393 - 2320223
Alignment:
Q  249 ttaattgaccgaagttaggtggaaggatacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtt 348  Q
    |||||| ||||||||||| ||| ||   ||| ||||||||||| | ||| || |||| ||||| |||||  |||||||  |||||||||||||| |||||    
T  2320393 ttaatttaccgaagttagatgggagaccaccagtgagaaaattgtttgagatgtcaaggtatagtaattgggtgagatcagtaagagaaataggaaagtt 2320294  T
Q  349 tccattgagtctattgtgagatagaattaatacagttagatttttcaagaaccccaactcaagaggaatgg 419  Q
    |||||||||||| |||| |||||||  ||||   |||| |||||||| ||| ||||||||| | |||||||    
T  2320293 tccattgagtctgttgtcagatagatgtaatgtcgttatatttttcaggaaacccaactcatgtggaatgg 2320223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 1595404 - 1595267
Alignment:
Q  282 tgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaattaatac 381  Q
    |||| |||||||  ||||| |||| |||| |||||||||| ||||||| |||| ||||||||| ||||||||| ||||||||||||||||||  ||||      
T  1595404 tgagtaaattatgggaaatgtcaaggtattctaattttgtaagatttgaaagaaaaataggcaggtttccattaagtctattgtgagatagatctaatgt 1595305  T
Q  382 agttagatttttcaagaaccccaactcaagaggaatgg 419  Q
    |   ||||||| |||||| ||||| ||| |||||||||    
T  1595304 atagagattttccaagaatcccaattcatgaggaatgg 1595267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 1603728 - 1603591
Alignment:
Q  282 tgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaattaatac 381  Q
    |||| |||||||  ||||| |||| ||||  ||||| ||| ||||||| |||| ||||||||| ||| ||||| ||||||||||||||||||  ||||      
T  1603728 tgagtaaattatgggaaatgtcaaggtattgtaattgtgtaagatttgaaagaaaaataggcaggttaccattaagtctattgtgagatagatctaatga 1603629  T
Q  382 agttagatttttcaagaaccccaactcaagaggaatgg 419  Q
    ||  |||| || ||||||||||||||||||||||||||    
T  1603628 agagagatattccaagaaccccaactcaagaggaatgg 1603591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 419
Target Start/End: Complemental strand, 1607385 - 1607285
Alignment:
Q  319 tgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaattaatacagttagatttttcaagaaccccaactcaagaggaatg 418  Q
    |||||| ||||||||  | ||||||||||||  ||||| |||||||| |||||||  ||||  ||| |||||||||||||||||||||||| ||||||||    
T  1607385 tgtgaggtttgtaaggaatataggcaagtttatattgaatctattgttagatagatctaatttagtgagatttttcaagaaccccaactcatgaggaatg 1607286  T
Q  419 g 419  Q
    |    
T  1607285 g 1607285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 1542497 - 1542563
Alignment:
Q  353 ttgagtctattgtgagatagaattaatacagttagatttttcaagaaccccaactcaagaggaatgg 419  Q
    |||| |||||||| |||||||  ||||| ||| ||||||||||||||||||||||||||||||||||    
T  1542497 ttgaatctattgtaagatagatctaatatagtgagatttttcaagaaccccaactcaagaggaatgg 1542563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 373
Target Start/End: Original strand, 1542277 - 1542373
Alignment:
Q  277 acctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagataga 373  Q
    |||| |||| |||||||  ||||| |||| |||| |||||| ||| ||||||| |||| ||||||| | ||||||||| ||||||||||||||||||    
T  1542277 acctatgaggaaattatgggaaatgtcaaggtattctaattgtgtaagatttgaaagaaaaataggtaggtttccattaagtctattgtgagataga 1542373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 2329150 - 2329111
Alignment:
Q  47 gaagggatttcaccactaatgaggttgtaactgaggtcaa 86  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2329150 gaagggatttcaccaccaatgaggttgtaactgaggtcaa 2329111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 1558205 - 1558285
Alignment:
Q  339 taggcaagtttccattgagtctattgtgagatagaattaatacagttagatttttcaagaaccccaactcaagaggaatgg 419  Q
    |||||| ||| ||||| ||||||||||||||||||  ||||  ||  |||| || |||||||||||||||| |||||||||    
T  1558205 taggcaggttaccattaagtctattgtgagatagatctaatgaagagagatattccaagaaccccaactcatgaggaatgg 1558285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 2336929 - 2336853
Alignment:
Q  146 ttgtgagaaatgtcaagggtttttaatagaaggatatttgtaaaggaaattggaaaggttccaccgatggagttgtt 222  Q
    ||||| |||||||||||||||| |||| ||  || |||||| || ||||||||| |||| ||||| |||||||||||    
T  2336929 ttgtgggaaatgtcaagggtttgtaattgagagagatttgttaaagaaattggataggtcccaccaatggagttgtt 2336853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 3852422 - 3852374
Alignment:
Q  302 tcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttc 350  Q
    |||||||||  ||||| ||||||||||||||| ||||||||||||||||    
T  3852422 tcaatgtattgtaattgtgtgagatttgtaagggaaataggcaagtttc 3852374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 2337049 - 2337010
Alignment:
Q  47 gaagggatttcaccactaatgaggttgtaactgaggtcaa 86  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  2337049 gaagggatttcaccaccaatgaggttgtaactaaggtcaa 2337010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 1087732 - 1087699
Alignment:
Q  386 agatttttcaagaaccccaactcaagaggaatgg 419  Q
    ||||||||||||||||| ||||||||||||||||    
T  1087732 agatttttcaagaaccctaactcaagaggaatgg 1087699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 1105399 - 1105362
Alignment:
Q  47 gaagggatttcaccactaatgaggttgtaactgaggtc 84  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  1105399 gaagggattttaccactaatgaggttgtgactgaggtc 1105362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 1542191 - 1542228
Alignment:
Q  47 gaagggatttcaccactaatgaggttgtaactgaggtc 84  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  1542191 gaagggatttgaccactaatgaggttgtgactgaggtc 1542228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 1595495 - 1595458
Alignment:
Q  47 gaagggatttcaccactaatgaggttgtaactgaggtc 84  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  1595495 gaagggatttcaccattaatgaggttgtgactgaggtc 1595458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 1603819 - 1603782
Alignment:
Q  47 gaagggatttcaccactaatgaggttgtaactgaggtc 84  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  1603819 gaagggattttaccactaatgaggttgtgactgaggtc 1603782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 3956417 - 3956486
Alignment:
Q  281 gtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttc 350  Q
    ||||||||||| |  || || |||||||||  ||||| |||||||||||||||  |||||||||||||||    
T  3956417 gtgagaaaattgttagagatgtcaatgtattgtaattgtgtgagatttgtaaggaaaataggcaagtttc 3956486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 249 - 416
Target Start/End: Original strand, 6906 - 7073
Alignment:
Q  249 ttaattgaccgaagttaggtggaaggatacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtt 348  Q
    |||||||| | ||||||  |||||||| ||| |||| ||||||||||||    | || ||||| ||||| |||||||||| ||||||||||||||| |||    
T  6906 ttaattgatcaaagttatatggaaggaaaccagtgaaaaaattatatgagcagttaaggtatattaattgtgtgagatttttaagagaaataggcaggtt 7005  T
Q  349 tccattgagtctattgtgagatagaattaatacagttagatttttcaagaaccccaactcaagaggaa 416  Q
    ||||||||||||||||||||| |||  ||||  ||| ||||||||||  ||||||||||||| |||||    
T  7006 tccattgagtctattgtgagacagatctaatgtagtgagatttttcagtaaccccaactcaaaaggaa 7073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 1965 - 2107
Alignment:
Q  276 tacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaat 375  Q
    ||||| |||| ||||||||||| || |||| |||  |||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||||      
T  1965 tacctatgagtaaattatatgagatgtcaaggtaatctaattgtgtaagatttgtaaga-aattaggcaagtttccattgagtctattgtgagatagatc 2063  T
Q  376 taatacagttagatttttcaagaaccccaactcaagaggaatgg 419  Q
    ||||    | | |||| | | |||||||||||||||||||||||    
T  2064 taatgtgatgatatttctgaggaaccccaactcaagaggaatgg 2107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 249 - 416
Target Start/End: Original strand, 18724413 - 18724580
Alignment:
Q  249 ttaattgaccgaagttaggtggaaggatacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtt 348  Q
    |||||||| | ||||||  |||||||| ||| |||| ||||||||||||    | || ||||| ||||| |||||||||| ||||||||||||||| |||    
T  18724413 ttaattgatcaaagttatatggaaggaaaccagtgaaaaaattatatgagcagttaaggtatattaattgtgtgagatttttaagagaaataggcaggtt 18724512  T
Q  349 tccattgagtctattgtgagatagaattaatacagttagatttttcaagaaccccaactcaagaggaa 416  Q
    ||||||||||||||||||||| |||  ||||  ||| ||||||||||  ||||||||||||| |||||    
T  18724513 tccattgagtctattgtgagacagatctaatgtagtgagatttttcagtaaccccaactcaaaaggaa 18724580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 268 - 416
Target Start/End: Original strand, 18750084 - 18750232
Alignment:
Q  268 tggaaggatacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtga 367  Q
    |||||||| ||| |||| ||||||||||||    | || ||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  18750084 tggaaggaaaccagtgaaaaaattatatgagcagttaaggtatattaattgtgtgagatttttaagagaaataggcaggtttccattgagtctattgtga 18750183  T
Q  368 gatagaattaatacagttagatttttcaagaaccccaactcaagaggaa 416  Q
    || |||  ||||  ||| ||||||||||  ||||||||||||| |||||    
T  18750184 gacagatctaatgtagtgagatttttcagtaaccccaactcaaaaggaa 18750232  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 18740086 - 18740229
Alignment:
Q  276 tacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaat 375  Q
    ||||| |||| ||||||||||| || |||| |||  |||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||||      
T  18740086 tacctatgagtaaattatatgagatgtcaaggtaatctaattgtgtaagatttgtaagaaaattaggcaagtttccattgagtctattgtgagatagatc 18740185  T
Q  376 taatacagttagatttttcaagaaccccaactcaagaggaatgg 419  Q
    ||||    | | |||| | | |||||||||||||||||||||||    
T  18740186 taatgtgatgatatttctgaggaaccccaactcaagaggaatgg 18740229  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 18745050 - 18745193
Alignment:
Q  276 tacctgtgagaaaattatatgaaatatcaatgtatactaattttgtgagatttgtaagagaaataggcaagtttccattgagtctattgtgagatagaat 375  Q
    ||||| |||| ||||||||||| || |||| |||  |||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||||      
T  18745050 tacctatgagtaaattatatgagatgtcaaggtaatctaattgtgtaagatttgtaagaaaattaggcaagtttccattgagtctattgtgagatagatc 18745149  T
Q  376 taatacagttagatttttcaagaaccccaactcaagaggaatgg 419  Q
    ||||    | | |||| | | |||||||||||||||||||||||    
T  18745150 taatgtgatgatatttctgaggaaccccaactcaagaggaatgg 18745193  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 18749856 - 18749918
Alignment:
Q  22 aagttgttgaaaatttcgaatcatggaagggatttcaccactaatgaggttgtaactgaggtc 84  Q
    |||||||||||||| || || |   ||||| |||||||||||||||||||||| |||||||||    
T  18749856 aagttgttgaaaatatccaagctcagaaggtatttcaccactaatgaggttgtgactgaggtc 18749918  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 29748444 - 29748407
Alignment:
Q  47 gaagggatttcaccactaatgaggttgtaactgaggtc 84  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  29748444 gaagagatttcaccactaatgaggttgtgactgaggtc 29748407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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