View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14061_low_1 (Length: 839)

Name: NF14061_low_1
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14061_low_1
NF14061_low_1
[»] chr7 (8 HSPs)
chr7 (556-838)||(48084279-48084561)
chr7 (286-559)||(48083977-48084253)
chr7 (19-222)||(48083709-48083913)
chr7 (416-498)||(48091797-48091879)
chr7 (381-457)||(48066494-48066570)
chr7 (21-95)||(48091513-48091587)
chr7 (426-497)||(1808047-1808118)
chr7 (416-498)||(48074707-48074789)
[»] chr1 (5 HSPs)
chr1 (649-791)||(35377077-35377219)
chr1 (647-816)||(35358405-35358574)
chr1 (682-788)||(35370606-35370712)
chr1 (433-497)||(35377880-35377944)
chr1 (412-497)||(35358962-35359047)
[»] chr4 (2 HSPs)
chr4 (715-794)||(6341675-6341754)
chr4 (432-497)||(6342778-6342843)
[»] chr6 (1 HSPs)
chr6 (693-775)||(7386882-7386964)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 556 - 838
Target Start/End: Original strand, 48084279 - 48084561
Alignment:
Q  556 aattaacacatgtatgattggttggtttggcagatccatatcattcgaatctacaagcagctaaggctatttgaattgtatcagaaaagagtaagtgcac 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084279 aattaacacatgtatgattggttggtttggcagatccatatcattcgaatctacaagcagctaaggctatttgaattgtatcagaaaagagtaagtgcac 48084378  T
Q  656 acattggttcagaaggagcaagaaacctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttccttt 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084379 acattggttcagaaggagcaagaaacctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttccttt 48084478  T
Q  756 ttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccgagtaccgtaaagttctcagggtattat 838  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48084479 ttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccgagtaccgcaaagttctcagggtattat 48084561  T

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Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 286 - 559
Target Start/End: Original strand, 48083977 - 48084253
Alignment:
Q  286 caacatgtaattttgactaatcatatacttgtttctaacatttgtataattaatgtgctactctattgttaattgcaggtttggagcttgggttagagcc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48083977 caacatgtaattttgactaatcatatacttgtttctaacatttgtataattaatgtgctactctattgttaattgcaggtttggagcttgggttagagcc 48084076  T
Q  386 tacacttccatacttgagcccactactagttggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattc 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48084077 tacacttccatacttgagcccactactagttggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattc 48084176  T
Q  486 cagtttgtaagtgtaacattaaactattagtag---taattcaaattgttaaaacattaatataatgctactaaatt 559  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||    
T  48084177 cagtttgtaagtgtaacattaaactattagtagtaataattcaaattgttaaaacattaatataatgctaccaaatt 48084253  T

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Target: chr7; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 48083709 - 48083913
Alignment:
Q  19 catatggcattgattatccaagtcacaggcctaccggacgtttctctaatggctacaatatccctgacctaatcagtaagatcgagtttaccattgctac 118  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48083709 catatggcattgattatccaagtcacaggcctacagggcgtttctctaatggctacaatatccctgacctaattagtaagatcgagtttaccattgctac 48083808  T
Q  119 tnnnnnnnncttgtatcgactaggaaaatttggaaagagaaaacataaaatatttctctaaattagtcaccaaatttagtgacaagagaa-tagctagaa 217  Q
    |        ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48083809 taaaaaaaacttgtatcggctagggaaatttggaaagagaaaacataaaatatttctctaaattagtcaccaaatttagtgacaagagaattagctagaa 48083908  T
Q  218 aactc 222  Q
    |||||    
T  48083909 aactc 48083913  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 48091797 - 48091879
Alignment:
Q  416 tggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagtg 498  Q
    |||||||  ||| ||| |||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||    
T  48091797 tggagaggcgctactagttggtgccaattttgcttccgctggcattggaattctcaatgataccggaatccagtttgtaagtg 48091879  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 381 - 457
Target Start/End: Original strand, 48066494 - 48066570
Alignment:
Q  381 gagcctacacttccatacttgagcccactactagttggagagaagcttctaattggtgccaactttgcatccgctgg 457  Q
    |||| |||||||||||| ||||||||||| || ||  ||||||||||| ||||||||||||| ||||||||| ||||    
T  48066494 gagcttacacttccatatttgagcccactgcttgtccgagagaagcttgtaattggtgccaattttgcatccactgg 48066570  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 48091513 - 48091587
Alignment:
Q  21 tatggcattgattatccaagtcacaggcctaccggacgtttctctaatggctacaatatccctgacctaatcagt 95  Q
    ||||||||||||||||||| ||  || || |||||||||||||||||||||||||| || |||||| | ||||||    
T  48091513 tatggcattgattatccaactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagt 48091587  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 497
Target Start/End: Original strand, 1808047 - 1808118
Alignment:
Q  426 cttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagt 497  Q
    ||||||||||||||||| ||||  || ||||| |||||||| || |||||||||||| | || |||||||||    
T  1808047 cttctaattggtgccaattttggttcagctggaattggaatccttaatgataccggagttcaatttgtaagt 1808118  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 48074707 - 48074789
Alignment:
Q  416 tggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagtg 498  Q
    |||||||  ||| ||| |||||||||| || || || ||||| |||||||||||||||||||| ||| | || ||||||||||    
T  48074707 tggagaggcgctactagttggtgccaatttcgcttctgctggaattggaattctcaatgatactggaattcaatttgtaagtg 48074789  T

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Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 649 - 791
Target Start/End: Complemental strand, 35377219 - 35377077
Alignment:
Q  649 agtgcacacattggttcagaaggagc-aagaaacctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttg 747  Q
    |||||||| |||||| |||| | ||| ||||||| ||||| ||| |||| | |||||||||  |||||| ||||| |||||||||||||| |||||||||    
T  35377219 agtgcacatattggtgcagaggaagctaagaaac-tagtccacaaagcaattgtactcatcgttcttggaggcaacgattttgtcaacaattattatttg 35377121  T
Q  748 gttcctttttcagcaagatctcgtcaattttctctcccagatta 791  Q
    || || ||||||||||||||||| ||||||||||| ||||||||    
T  35377120 gtcccattttcagcaagatctcgccaattttctcttccagatta 35377077  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 647 - 816
Target Start/End: Complemental strand, 35358574 - 35358405
Alignment:
Q  647 taagtgcacacattggttcagaaggagcaagaaacctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattattt 746  Q
    |||||||||| |||||| |||| ||||| | | | |||||||||| |||| | ||||||||||  ||||| ||||| ||||||||||| || ||||||||    
T  35358574 taagtgcacaaattggtgcagagggagctaaacaactagtcaacaaagcaattgtactcatcatgcttggaggcaacgattttgtcaataattattattt 35358475  T
Q  747 ggttcctttttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccgagtac 816  Q
    ||| || |||||||| |||||||| ||||||||||| ||| | ||||||   |||||||| || ||||||    
T  35358474 ggtcccattttcagctagatctcgccaattttctcttccaaactatgtcacctatctcatatctgagtac 35358405  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 682 - 788
Target Start/End: Complemental strand, 35370712 - 35370606
Alignment:
Q  682 ctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctc 781  Q
    |||||||||| |||||| |||||||||| | |||| ||||| |||||||| ||||| ||||||| ||  || ||||||||||||||||| ||||||||||    
T  35370712 ctagtcaacaaagcacttgtactcatcattattggaggcaacgattttgttaacaattattattgggccccattttcagcaagatctcgccaattttctc 35370613  T
Q  782 tcccaga 788  Q
    | |||||    
T  35370612 ttccaga 35370606  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 35377944 - 35377880
Alignment:
Q  433 ttggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagt 497  Q
    |||||||||| ||||||||||| || |||||||||||||||||||| ||||| || |||||||||    
T  35377944 ttggtgccaattttgcatccgcgggtattggaattctcaatgatactggatttcaatttgtaagt 35377880  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 412 - 497
Target Start/End: Complemental strand, 35359047 - 35358962
Alignment:
Q  412 tagttggagagaagcttctaattggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagt 497  Q
    ||||||| || || ||| || |||||||||| |||||||| || ||  ||||||||||||||||||||||||| || |||||||||    
T  35359047 tagttggtgaaaaacttttagttggtgccaattttgcatcagcaggtgttggaattctcaatgataccggatttcaatttgtaagt 35358962  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 715 - 794
Target Start/End: Complemental strand, 6341754 - 6341675
Alignment:
Q  715 ggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccagattatgt 794  Q
    ||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||||||| ||| | |||| || ||||||||    
T  6341754 ggtgggaatgattttgtgaacaactattatttggttccttactcagccagatctcgtgaatatgctcttcctgattatgt 6341675  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 6342843 - 6342778
Alignment:
Q  432 attggtgccaactttgcatccgctgggattggaattctcaatgataccggattccagtttgtaagt 497  Q
    |||||||| |||||||| || ||||||||||||||||||||||| || ||| | || |||||||||    
T  6342843 attggtgctaactttgcttctgctgggattggaattctcaatgacactggagttcaatttgtaagt 6342778  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 775
Target Start/End: Complemental strand, 7386964 - 7386882
Alignment:
Q  693 agcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaat 775  Q
    |||||| || ||||| ||| ||||||||||||||||||| || ||||| || ||||| |||| ||| ||||| ||||||||||    
T  7386964 agcacttgttctcataactgttggtggcaatgattttgtgaataactactacttggtgccttattctgcaaggtctcgtcaat 7386882  T

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