View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_11 (Length: 429)
Name: NF14061_low_11
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 8254946 - 8255353
Alignment:
| Q |
18 |
agggaaggggaagaaccaaaaaatattgtaacacttttttacaaaactcataaaattaatagttatcccgaaagcattcctattggctaaccacatgtgt |
117 |
Q |
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| T |
8254946 |
agggaaggggaagaaccaaaaaatactgtaacacttttttacaaaactcataaaattaatagttatcccgaaagcattcctattggctaaccacctgtgt |
8255045 |
T |
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| Q |
118 |
tttccgcccaattccttttgaaaaccatctcatgtatgttcacacccaactctgagtatgacatattgccttcgtgatttcttgggatggtttttctcgc |
217 |
Q |
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| T |
8255046 |
tttccgcccaattccttttgaaaaccatctcatgtatgttcacacccaactctgagtatgacatattgcctttgtgatttcttgggattgtttttctcgc |
8255145 |
T |
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| Q |
218 |
ggtgtatagcagtactgtttttaaaaaccataaaaatcaagnnnnnnnnnnnnnaaggacataaaaacaatagttaaatatatactatcatgaatttaaa |
317 |
Q |
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| T |
8255146 |
ggtgtatagcagtactgtttttaaaaaccataaaaatcaag----tttttttttaaggacataaaaacaatagttaaatatatactatcatgaatttaaa |
8255241 |
T |
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| Q |
318 |
agaaatcacaagcaggtttaacaaagaaaatacctacatcataatctctccatgaccatttgtctttgtgattcaagagctgaacaagaaagactgaagt |
417 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8255242 |
agaaatcacaagcaggtttagcaaagaaaatacctacatcataatctctccatgaccatttgtctttgtgattcaagagctgaacaagaaagactgaagt |
8255341 |
T |
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| Q |
418 |
ttgaagatcatc |
429 |
Q |
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| T |
8255342 |
ttgaagatcatc |
8255353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 45102736 - 45102862
Alignment:
| Q |
98 |
tattggctaaccacatgtgttttccgcccaattccttttgaaaaccatctcatgtatgttcacacccaactctgagtatgacatattgcctt-cgtgatt |
196 |
Q |
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| T |
45102736 |
tattggttacccacctgtgttttctgcccaattccttttgaaaatcgcctcatgtatttccacaaccaactgtcagcatgacacgttggctttcgtgatt |
45102835 |
T |
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| Q |
197 |
tcttgggatggtttttctcgcggtgta |
223 |
Q |
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| T |
45102836 |
tcttgggatggtttttgtcgcggtgta |
45102862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 79 - 225
Target Start/End: Complemental strand, 18962764 - 18962619
Alignment:
| Q |
79 |
gttatcccgaaagcattcctattggctaaccacatgtgttttccgcccaattccttttgaaaaccatctcatgtatgttcacacccaactctgagtatga |
178 |
Q |
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||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||| || |||| ||||||||| |||||| |||||||| ||| ||| |
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| T |
18962764 |
gttatcccgaatacattcctattggctacccacccgtgttttgtgcccaattccttt-gataaccgcctcatgtattttcacaaccaactctcagtgtga |
18962666 |
T |
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| Q |
179 |
catattgccttcgtgatttcttgggatggtttttctcgcggtgtata |
225 |
Q |
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||| |||| |||||||||||| |||| ||||||| ||| |||||||| |
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| T |
18962665 |
catgttgctttcgtgatttctcgggacggtttttgtcgtggtgtata |
18962619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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