View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14061_low_12 (Length: 402)
Name: NF14061_low_12
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 2 - 382
Target Start/End: Complemental strand, 27929232 - 27928852
Alignment:
| Q |
2 |
aagaataattgtctctgatattaatcggcatgctgttaaaatgtaagcaaaacatacctcaacggggagaaaaggcatattcaagaatcttgatgagaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27929232 |
aagaataattgtctctgatattaatcagcatgctgttaaaatgtaagcaaaacatacctcaacggggagaaaaggcatattcaagaatcttgatgagagg |
27929133 |
T |
|
| Q |
102 |
tcttctctatatgtatccttcttcctatctttcaattcttcagacaaataactgtcaatttcagaagatggttggttatataactcactgacaaaatgga |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27929132 |
tcttctccatatgtatccttcttcctatctttccattcttcagacaaataactgtcaatttcagaagatggttggttatataactcactgacaaaatgga |
27929033 |
T |
|
| Q |
202 |
gcaaagtaataatacaaacacatttaaggagtagcaaagtaacagttgacaaaatggacaccgataagttaaagaagagaaggaaatttaatgcaggcaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27929032 |
gcaaagtaataatacaaacacatttaaggagtagcaaagtaacagttgacaaaatggacactgataagttaaagaagagaaggaaatttaatgcaggcaa |
27928933 |
T |
|
| Q |
302 |
gtgtcattcagaagctcaaaaatacctttgcacaaggtctttcagaccattatgatgtcccttgatagaatccatatgcaa |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27928932 |
gtgtcattcagaagctcaaaaatacctttgcacaaggtctttcagaccattatgatgtcccttgatagaatccatatgcaa |
27928852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2 - 386
Target Start/End: Original strand, 28082605 - 28082989
Alignment:
| Q |
2 |
aagaataattgtctctgatattaatcggcatgctgttaaaatgtaagcaaaacatacctcaacggggagaaaaggcatattcaagaatcttgatgagaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| | |
|
|
| T |
28082605 |
aagaataattgtctctgatattaatcagcatgctgttaaaatgtaagcaagacatacctcaacggggagaaaatgcatattaaagaatcttgatgagagg |
28082704 |
T |
|
| Q |
102 |
tcttctctatatgtatccttcttcctatctttcaattcttcagacaaataactgtcaatttcagaagatggttggttatataactcactgacaaaatgga |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28082705 |
tcttctccatatgtatccttcttcctatctttccattcttcagacaaataactgtcaatttcagaagatggttgattatataactcactgacaaaatgga |
28082804 |
T |
|
| Q |
202 |
gcaaagtaataatacaaacacatttaaggagtagcaaagtaacagttgacaaaatggacaccgataagttaaagaagagaaggaaatttaatgcaggcaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28082805 |
gcaaagtaataatacaaacacatttaaggagtagcaaagtaacagttgacaaaatggacactgataagttaaagaagagaaggaaatttaatgcaggcaa |
28082904 |
T |
|
| Q |
302 |
gtgtcattcagaagctcaaaaatacctttgcacaaggtctttcagaccattatgatgtcccttgatagaatccatatgcaatata |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28082905 |
gtgtcattcagaagctcaaaaatacctttgcacaaggtctttcagaccattatgatgtcccttgatagaatccatatgcaatata |
28082989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 2 - 386
Target Start/End: Complemental strand, 27935157 - 27934777
Alignment:
| Q |
2 |
aagaataattgtctctgatattaatcggcatgctgttaaaatgtaagcaaaacatacctcaacggggagaaaaggcatattcaagaatcttgatgagaag |
101 |
Q |
| |
|
||||||| ||||||||| | |||||| ||||||||| ||||||||||||| ||||| || | |||||||| |||||||||||||||||||||||| | |
|
|
| T |
27935157 |
aagaatatttgtctctggttttaatcagcatgctgtgaaaatgtaagcaagtaataccgcagcttggagaaaacgcatattcaagaatcttgatgagagg |
27935058 |
T |
|
| Q |
102 |
tcttctctatatgtatccttcttcctatctttcaattcttcagacaaataactgtcaatttcagaagatggttggttatataactcactgacaaaatgga |
201 |
Q |
| |
|
||||||| | ||||| || ||||||| |||||| |||||||| |||||||||||| ||||||||| ||| | || ||| ||||||||| | | |
|
|
| T |
27935057 |
tcttctccacatgtacccatcttcctctctttccattcttcacacaaataactgtaaatttcagatgataagtcaataaatagctcactgacttattctt |
27934958 |
T |
|
| Q |
202 |
gcaaagtaataatacaaacacatttaaggagtagcaaagtaacagttgacaaaatggacaccgataagttaaagaagagaaggaaatttaatgcaggcaa |
301 |
Q |
| |
|
||||| |||||||||| | ||||| ||||||||||||||| |||||||| ||||||||| ||| || | ||| |||| |||||||| ||| | || |
|
|
| T |
27934957 |
ttaaagtgataatacaaataaatttacggagtagcaaagtaatagttgacacaatggacactgattag---agaaagtgaagcaaatttaaggcatggaa |
27934861 |
T |
|
| Q |
302 |
gtgtcattcagaagctcaaaaatacctttgcacaaggtctttcagaccattatgatgtcccttgatagaatccatatgcaatata |
386 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||| |
|
|
| T |
27934860 |
gtgtcattgagaagctc-aaaatacctttgcacaagatctttcagaccactatgatatcccttgatagaatccatatgcagtata |
27934777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University