View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14061_low_13 (Length: 401)
Name: NF14061_low_13
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 385
Target Start/End: Complemental strand, 660625 - 660279
Alignment:
| Q |
25 |
tcatattacaatggtttacttgtttagaccttgattatctgtcatgaatttaagtatgaatatatttttgcaaaattaatatatgttggaagatttgtta |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
660625 |
tcatattacaatggtttacttgtttagaccttgattatctgtcatgaatttaagtatgaatatatttttgcaaaattaatatatgttggaagatttgcta |
660526 |
T |
|
| Q |
125 |
tagttctgtttatcccccatgttacgtgtggtgcaggcttctattcatggcggcgcgattggaggttgttgccgcacaattcaacgttggcaagctcacg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
660525 |
tagttctgtttatcccccatgttacgtgtggtgcaggcttctattcatggcggcgcgattggaggtt------------------gttggcaagctcacg |
660444 |
T |
|
| Q |
225 |
accaaacatctctaattagattaatgaaca----nnnnnnnnnctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660443 |
accaaacatctctaattagattaatgaacatttttttttttttctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaa |
660344 |
T |
|
| Q |
321 |
ctcagatttcttgaactggtttttcatttatcttggattcgtgctaatatatgtggagaaaatac |
385 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
660343 |
ctcagatttcttgaactagtttttcatttatcttggattcatgctaatatatgtggagaaaatac |
660279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 385
Target Start/End: Original strand, 22070977 - 22071096
Alignment:
| Q |
264 |
ctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggattcgtg |
363 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| | |||||||||||||| |||||||||| |||| || |||||||||| ||| ||||||||||| || |
|
|
| T |
22070977 |
ctctttcttgcattttgtat--tattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatg |
22071074 |
T |
|
| Q |
364 |
ctaatatatgtggagaaaatac |
385 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22071075 |
ctaatatatgtggagaaaatac |
22071096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 22064987 - 22065136
Alignment:
| Q |
234 |
ctctaattagattaatgaacannnnnnnnnctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttg |
333 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||| | || ||| ||||| ||||| | |||||||||| |||||||| |
|
|
| T |
22064987 |
ctctaattagattaatgaacattctttttgctctttcttgcattttgtaa--tatttaagcatagtaaggaaattattcgatttcaactcaaatttcttg |
22065084 |
T |
|
| Q |
334 |
aactggtttttcatttatcttggattcgtgctaatatatgtggagaaaatac |
385 |
Q |
| |
|
|||| |||||| || ||||||||||| || | | ||||||||||||||||| |
|
|
| T |
22065085 |
aactagtttttagttgatcttggattcatgtttacatatgtggagaaaatac |
22065136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 22070781 - 22070827
Alignment:
| Q |
48 |
ttagaccttgattatctgtcatgaatttaagtatgaatatatttttg |
94 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
22070781 |
ttagagcttgattatctgtcctaaatttaagtatgaatatatttttg |
22070827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 15963235 - 15963311
Alignment:
| Q |
283 |
tattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggatt |
359 |
Q |
| |
|
||||||| ||||||| ||| | ||||||||||||||| |||| |||||| |||| |||||| ||| |||||||||| |
|
|
| T |
15963235 |
tattatttatgcctaaatagaaggttatttggtttcaattcagttttcttaaacttgtttttaattcatcttggatt |
15963311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University