View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_14 (Length: 385)
Name: NF14061_low_14
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 56298584 - 56298968
Alignment:
| Q |
1 |
gtgcatgctaaattttcaactcatcttatgnnnnnnnngcaaaatttacaaagattgaagagtaatctaaaaatttgtctgcaaattagataagatattg |
100 |
Q |
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| T |
56298584 |
gtgcatgctaaattttcaactcatcttatgttttttttgcaaaatttacaaagagtgaagagtaatctaaaaatttgtctgcaaattagataagatattg |
56298683 |
T |
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| Q |
101 |
atgattaata------tacaaggaaatgattaaatcactactcgatcgaatgtatgacggtgccagaactcctattatttgatcaattaa-----ctgaa |
189 |
Q |
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| T |
56298684 |
atgattaatactattatataaggaaatgattaaatcactactcgatcgaatgtatgacggtgccagaactcctattatttgatcaattaattaatctgaa |
56298783 |
T |
|
| Q |
190 |
agatgcatataagtgatgtcaacagcatatatggataatgtctt-------tccaaaaattagatataggttggacggttaaattaaacacaaataccat |
282 |
Q |
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| T |
56298784 |
agatgcatataagtgatgccaatagcatatatggataatgtcttaagtctttccacaaattagatattggttggacggttaaactaaacacaaataccat |
56298883 |
T |
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| Q |
283 |
aaagatatacgagacaaacga-ttcttttttggtcggtacatgattgacacatacaatacgacgaacttgtccttttttgccacc |
366 |
Q |
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| T |
56298884 |
aaagatatacgagacaaacgatttcttttctggtcggtacaagattgacacatacaatacgacgaacttgtccttttttgccacc |
56298968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 4286236 - 4286293
Alignment:
| Q |
186 |
tgaaagatgcatataagtgatgtcaacagcatatatggataatgtctttccaaaaatt |
243 |
Q |
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| T |
4286236 |
tgaacgatgcatataagtgatgccaataacatatatggataatgtctttccacaaatt |
4286293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 40220763 - 40220808
Alignment:
| Q |
198 |
ataagtgatgtcaacagcatatatggataatgtctttccaaaaatt |
243 |
Q |
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| T |
40220763 |
ataagtgatgccaatagcatatatggatgatgtctttccacaaatt |
40220808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 48590264 - 48590213
Alignment:
| Q |
192 |
atgcatataagtgatgtcaacagcatatatggataatgtctttccaaaaatt |
243 |
Q |
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| T |
48590264 |
atgcatataagtgatgccaatagcatatatggatgatgtctttccacaaatt |
48590213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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