View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_19 (Length: 313)
Name: NF14061_low_19
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 152 - 302
Target Start/End: Complemental strand, 6383735 - 6383585
Alignment:
| Q |
152 |
attttcaaccaaggaaataacataccttttcgacaaggtgttcagatcttcattttgtcccacttccgactaacttgcaacttccattttcaaggaattg |
251 |
Q |
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| T |
6383735 |
attttcaaccaaggaaataacataccttttcgacaaggtgttcagatcttcattttgtcccacttccgactaacttgtaacttccattttcaaggaattg |
6383636 |
T |
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| Q |
252 |
aaatatttgaagaagataatccatggtttcatccacactcgaatcccctat |
302 |
Q |
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| T |
6383635 |
aaatatttgaagaagataatccatggtttcatccacactcgaatcccctat |
6383585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 6383939 - 6383805
Alignment:
| Q |
19 |
aagaatgagaattacaacaactcaaaacaaaatgttacactttctcaaaccatgagtaactcactataaaactactagaaactccctaaacgacaagaaa |
118 |
Q |
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| T |
6383939 |
aagaatgagaattacaacaactcaaaacaaaatgttacactttctcaaaccatgagtaactcactataaaactactagaaactccttaaacgacaagaaa |
6383840 |
T |
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| Q |
119 |
aagacttgattacatactgaaaaacatcatatgat |
153 |
Q |
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| T |
6383839 |
aagacttgattacatactgaaaaacatcatatgat |
6383805 |
T |
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