View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14061_low_21 (Length: 299)

Name: NF14061_low_21
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14061_low_21
NF14061_low_21
[»] chr4 (10 HSPs)
chr4 (11-281)||(6948128-6948398)
chr4 (152-272)||(11160646-11160766)
chr4 (161-275)||(11931944-11932058)
chr4 (152-219)||(11166276-11166343)
chr4 (154-218)||(11179291-11179355)
chr4 (154-200)||(11174669-11174715)
chr4 (154-200)||(11182131-11182177)
chr4 (117-218)||(11189953-11190054)
chr4 (14-79)||(11190104-11190169)
chr4 (155-213)||(52791991-52792049)
[»] chr7 (2 HSPs)
chr7 (11-281)||(662138-662408)
chr7 (163-273)||(6778514-6778624)
[»] chr8 (4 HSPs)
chr8 (161-221)||(24817214-24817274)
chr8 (30-84)||(24817071-24817125)
chr8 (155-204)||(24406504-24406553)
chr8 (155-204)||(24412655-24412704)
[»] chr5 (4 HSPs)
chr5 (161-206)||(8981943-8981988)
chr5 (155-206)||(8991442-8991493)
chr5 (161-242)||(35390508-35390589)
chr5 (30-79)||(36687067-36687116)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 6948398 - 6948128
Alignment:
Q  11 catcatcatcatcgataaagaagttcaccatgaagagttccgacggtgagacctttgaaatcgaagaggttgtgttccaatcaatcaagaatttgacgga 110  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6948398 catcatcatcatcgacaaagaagttcaccatgaagagttccgacggtgagacatttgaaatcgaagaggttgtgttccaatcaatcaagaatttgacgga 6948299  T
Q  111 tgatgctgccaacgacactgaaatcctggttccgcacatacccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagt 210  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948298 tggtgctgccaacgacactgaaatcctggttccgcacatacccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagt 6948199  T
Q  211 tccgatgaaaagctctttgatgatgaacttaacaaatgggacactgaattcgtaaaggttgataatgttac 281  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948198 tctgatgaaaagctctttgatgatgaacttaacaaatgggacactgaattcgtaaaggttgataatgttac 6948128  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 11160646 - 11160766
Alignment:
Q  152 ccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaacaaatggga 251  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||| ||| ||||||| |||||||||| || ||| |||||| |||||||||||||    
T  11160646 ccggcaagatcttggctatggttattgagcattgcaagaagcatgttgacgctaccagttctgatgaaaagccctctgaagatgaaattaacaaatggga 11160745  T
Q  252 cactgaattcgtaaaggttga 272  Q
    |||||||||||| ||||||||    
T  11160746 cactgaattcgtcaaggttga 11160766  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 11932058 - 11931944
Alignment:
Q  161 tcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaacaaatgggacactgaatt 260  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||  || |||||| | || ||||||||  |||||||    
T  11932058 tcttggcgaaggttattgagtattgcaagaagcatgttgaggctgagagttccgatggaaagccctccgaggatgaattgaagaaatgggatgctgaatt 11931959  T
Q  261 cgtaaaggttgataa 275  Q
    ||| |||||||||||    
T  11931958 cgtcaaggttgataa 11931944  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 11166343 - 11166276
Alignment:
Q  152 ccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaa 219  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  11166343 ccggcaagatcttggctatggttattgagtattgcaagaaacatgttgatgctgcaagttctgatgaa 11166276  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 11179355 - 11179291
Alignment:
Q  154 ggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatga 218  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| |||||    
T  11179355 ggcaagatcttggctatggttattgagtattgcaagaaacatgttgatgctgcaagttctgatga 11179291  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 11174669 - 11174715
Alignment:
Q  154 ggcaagttcttggctaaggttattgagtattgcaagaagcatgttga 200  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||    
T  11174669 ggcaagatcttggctaaggttatcgagtattgcaagaaacatgttga 11174715  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 11182131 - 11182177
Alignment:
Q  154 ggcaagttcttggctaaggttattgagtattgcaagaagcatgttga 200  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||    
T  11182131 ggcaagatcttggctaaggttatcgagtattgcaagaaacatgttga 11182177  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 11190054 - 11189953
Alignment:
Q  117 tgccaacgacactgaaatcctggttccgcacatacccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgat 216  Q
    |||||| |||||||||||||   || || || || | |||||| ||||||| | ||||||||||||||||||||| |||||||| ||||  ||||| |||    
T  11190054 tgccaatgacactgaaatccctatttcgaacgtaacaggcaagatcttggccatggttattgagtattgcaagaaacatgttgatgctgtaagttctgat 11189955  T
Q  217 ga 218  Q
    ||    
T  11189954 ga 11189953  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 11190169 - 11190104
Alignment:
Q  14 catcatcatcgataaagaagttcaccatgaagagttccgacggtgagacctttgaaatcgaagagg 79  Q
    |||||||||| || |||||| ||| | |||||||||| || || ||||||||||||||||||||||    
T  11190169 catcatcatcaatgaagaagatcatcctgaagagttctgaaggcgagacctttgaaatcgaagagg 11190104  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 52792049 - 52791991
Alignment:
Q  155 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttcc 213  Q
    ||||| ||||| | ||||||||||||||||| |||||||| ||||| ||| ||||||||    
T  52792049 gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttcc 52791991  T

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Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 662408 - 662138
Alignment:
Q  11 catcatcatcatcgataaagaagttcaccatgaagagttccgacggtgagacctttgaaatcgaagaggttgtgttccaatcaatcaagaatttgacgga 110  Q
    ||||||||||||| |  |||||| ||||| |||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  662408 catcatcatcatccacgaagaagatcaccttgaagagttccgacagcgtgacctttgaaatcgaagaggtggtgttccaatcaatcaagaatttgaccga 662309  T
Q  111 tgatgctgccaacgacactgaaatcctggttccgcacatacccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagt 210  Q
    ||||| |||| |||||| ||||||||||||||||| |||| | |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  662308 tgatgttgccgacgacattgaaatcctggttccgcgcataacgggcaagatattggctaaggttattgagtattgcaagaaacatgttgaggctgccagt 662209  T
Q  211 tccgatgaaaagctctttgatgatgaacttaacaaatgggacactgaattcgtaaaggttgataatgttac 281  Q
    ||  |||||||||||||||||||| |||||||||||||| |||||||||||||  ||||||||||||||||    
T  662208 tcttatgaaaagctctttgatgataaacttaacaaatggtacactgaattcgtcgaggttgataatgttac 662138  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 6778514 - 6778624
Alignment:
Q  163 ttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaacaaatgggacactgaattcg 262  Q
    ||||| ||||| ||||| || || |||||||||||||| || || |||||||||||||| |  |  || ||||| ||||| || |||||  |||||||||    
T  6778514 ttggcgaaggtgattgaatactgtaagaagcatgttgatgccgcgagttccgatgaaaaaccttcagaagatgatcttaagaattgggatgctgaattcg 6778613  T
Q  263 taaaggttgat 273  Q
    | |||||||||    
T  6778614 tgaaggttgat 6778624  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 24817214 - 24817274
Alignment:
Q  161 tcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaa 221  Q
    ||||||| || ||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  24817214 tcttggcgaaagttattgagtattgcaagaagcatgttgaggctacaagttccgaagaaaa 24817274  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 24817071 - 24817125
Alignment:
Q  30 gaagttcaccatgaagagttccgacggtgagacctttgaaatcgaagaggttgtg 84  Q
    |||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||||    
T  24817071 gaagatcaccttgaaaagttccgacggcgagacctttgaaatcgacgaggttgtg 24817125  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 24406553 - 24406504
Alignment:
Q  155 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggct 204  Q
    ||||| ||||||| |||||||| |||||||| ||||||||||||||||||    
T  24406553 gcaagatcttggcaaaggttatcgagtattgtaagaagcatgttgaggct 24406504  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 24412655 - 24412704
Alignment:
Q  155 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggct 204  Q
    ||||| ||||| | |||||||| |||||||| ||||||||||||||||||    
T  24412655 gcaagatcttgacaaaggttatcgagtattgtaagaagcatgttgaggct 24412704  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 8981943 - 8981988
Alignment:
Q  161 tcttggctaaggttattgagtattgcaagaagcatgttgaggctgc 206  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  8981943 tcttggcgaaggtgattgagtattgcaagaagcatgttgaggctgc 8981988  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 8991442 - 8991493
Alignment:
Q  155 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgc 206  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8991442 gcaagatcttggcgaaggtgattgagtattgcaagaagcatgttgacgctgc 8991493  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 35390589 - 35390508
Alignment:
Q  161 tcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaa 242  Q
    ||||||| ||||||||||||||||| || |||||||||||||| |  |||||||| ||||| | |||  ||||||| |||||    
T  35390589 tcttggcgaaggttattgagtattgtaaaaagcatgttgaggccgggagttccgaagaaaaacccttacatgatgatcttaa 35390508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 36687116 - 36687067
Alignment:
Q  30 gaagttcaccatgaagagttccgacggtgagacctttgaaatcgaagagg 79  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||| ||||    
T  36687116 gaagatcaccctgaagagttccgacggggagacctttgaaatcgacgagg 36687067  T

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