View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_22 (Length: 299)
Name: NF14061_low_22
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 52 - 289
Target Start/End: Original strand, 38128638 - 38128875
Alignment:
| Q |
52 |
atatgcatgtttctcatgagtacaaaatggccaatgagaataaagtacatcaataatctacaaaatgattactgtagaaaaaacaatgacatgtatactt |
151 |
Q |
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| T |
38128638 |
atatgcatgtttctcatgagtccaaaatggccaatgagaataaagtacatcaataatctagaaaatgattactgtagaaaaaacaatgacatgtatactt |
38128737 |
T |
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| Q |
152 |
gtagcatttttggcatgcttgccagatagacttgaatgagctggatacactaaaattaatacacaccaaagacacaaacttttgtggtccaatatgtctt |
251 |
Q |
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| T |
38128738 |
gtagcatttttggcatgcttgccagatagacttgaatgagctggatacactaaaattaatacacaccaaagacacaaacttttgtggtccaatatgtctt |
38128837 |
T |
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| Q |
252 |
ctgtataaagtcctaacttcaaccacccttatcctatg |
289 |
Q |
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| T |
38128838 |
ctgtataaagtcctaacttcaaccacccttatcctatg |
38128875 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 487809 - 487733
Alignment:
| Q |
89 |
gaataaagtacatcaataatctacaaaatgattactgtagaaaaaacaatgacatgtatacttgtagcatttttggc |
165 |
Q |
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| T |
487809 |
gaataaagtacatctacaatctagaaaatgatcattgtagaagagacaatgacacatatacttgtagtttttttggc |
487733 |
T |
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