View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_26 (Length: 238)
Name: NF14061_low_26
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 40849251 - 40849457
Alignment:
| Q |
13 |
atgaagcttggatgagagtttggaaattgctaaacaatgaagagtacttttttcagaagaaaaagaagttgttgtttcttatgaaatagttcattagtac |
112 |
Q |
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| T |
40849251 |
atgaagcttggatgagagtttggaaa--gctaaacaatgaagagtacttttttcagaagaaaaagaagttgttgtttcttatgaaatagttcattagtac |
40849348 |
T |
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| Q |
113 |
cttcgattaggaaatgttaaatcttgtatttgacatattcaaatgttctttgtaatatcttctctcttttcattgattcaactttaaattaaatataata |
212 |
Q |
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| T |
40849349 |
cttcaattaggaaatgttaaatcttgtatttgacatattcaaatgttctttgtaatatcttctctcttttcattgattcaactttaaattaaatataata |
40849448 |
T |
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| Q |
213 |
tttcttgtg |
221 |
Q |
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| T |
40849449 |
tttcttgtg |
40849457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 40795218 - 40795327
Alignment:
| Q |
106 |
ttagtaccttcgattaggaaatgttaaatcttgtatttgacatattcaaatgttctttgtaatatcttctctcttttcattgattcaactttaaattaaa |
205 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||| ||| | | | |||||||||| || |||||||| | |||||| |||| || ||| |
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| T |
40795218 |
ttagcaccttcgattaggaaatgttgaatcttgtatttgacatgttccattttcctttgtaatactttttctctttttctgtattcaaatttatataaaa |
40795317 |
T |
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| Q |
206 |
tataatattt |
215 |
Q |
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| T |
40795318 |
tataatattt |
40795327 |
T |
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