View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_27 (Length: 207)
Name: NF14061_low_27
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 17511574 - 17511431
Alignment:
| Q |
19 |
atgaagcgtgatataaaatattaacaaagtgtgtgcaactgtagcatcagaggaagagacggtggcggaaggtcgcagtggaaggtctgataaggtggtg |
118 |
Q |
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| T |
17511574 |
atgaagcgtggtgtaaaatattaacaaagtgtgtgcaactgtagtatcagaggaagagacggtggcggaaggtcgtagtggaaggtccgataaggtggtg |
17511475 |
T |
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| Q |
119 |
aagttaggaggaagatgataatggaggatgagtagttagatctg |
162 |
Q |
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| T |
17511474 |
aggttaggaggaagatgataatggaggatgagtagttagatctg |
17511431 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 33408948 - 33408853
Alignment:
| Q |
62 |
gcatcagaggaagagacggtggcggaaggtcgcagtggaaggtctgataaggtggtgaagttaggaggaagatgataatggaggatgagtagttag |
157 |
Q |
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| T |
33408948 |
gcatcagaggaagagaaggtggatgaaggtcacaatggaaggtcggataagatggtgaggctaggaggaagatgataatagaggataagtggttag |
33408853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 4607706 - 4607575
Alignment:
| Q |
26 |
gtgatataaaatattaacaaagtgtgtgcaactgtagcatcagaggaagagacggtggcggaaggtcgcagtggaaggtctgataaggtggt-gaagtta |
124 |
Q |
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| T |
4607706 |
gtgatctaaaatgttaacaaagagtgtgcaactgtagcatcagaggaagagatggcggcggaaggtcacggtggaaggtccgatgaggtggtgggggcta |
4607607 |
T |
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| Q |
125 |
ggaggaagatgataatggaggatgagtagtta |
156 |
Q |
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| T |
4607606 |
ggaggaagatgataatagaggatgagtggtta |
4607575 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 40027988 - 40027921
Alignment:
| Q |
94 |
cagtggaaggtctgataaggtggtgaagttaggaggaagatgataatggaggatgagtagttagatct |
161 |
Q |
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| T |
40027988 |
cagtggaaggtcggataagatggtgaggctaggaggaagatgataatagaggataagtggttagatct |
40027921 |
T |
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