View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_28 (Length: 203)
Name: NF14061_low_28
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 11979901 - 11980074
Alignment:
| Q |
14 |
taatactggagatttcagtttgactgagcctttgtaaactacgaagtctcgaagagataggagcatgagaaaatcatctacggtgcacttgactcaagtt |
113 |
Q |
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| T |
11979901 |
taattctggagatatcagtttgatggagcctctgtaaactacgaagtctcgaagagataggagcatgagaaaatcatctacggtgcacttgactgaagtt |
11980000 |
T |
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| Q |
114 |
atgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaatgttcttgcacgacttcccattgtcac |
187 |
Q |
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| T |
11980001 |
atgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaatgttcttgcacgacttcccattgtcac |
11980074 |
T |
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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 11953801 - 11953879
Alignment:
| Q |
103 |
tgactcaagttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaatgttcttgcacgacttcccat |
181 |
Q |
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| T |
11953801 |
tgactgaagttatgaaaccagaaatttgggaaaagttccctgaagatctatttgaggttgtgcttgcacgacttcccat |
11953879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 34751422 - 34751470
Alignment:
| Q |
112 |
ttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaa |
160 |
Q |
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| T |
34751422 |
ttatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaa |
34751470 |
T |
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