View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14061_low_3 (Length: 595)

Name: NF14061_low_3
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14061_low_3
NF14061_low_3
[»] chr6 (1 HSPs)
chr6 (388-579)||(22422438-22422628)
[»] chr8 (4 HSPs)
chr8 (350-389)||(19970458-19970497)
chr8 (350-389)||(21022312-21022351)
chr8 (350-388)||(16367878-16367916)
chr8 (340-389)||(26960209-26960258)
[»] chr1 (4 HSPs)
chr1 (350-388)||(38236310-38236348)
chr1 (350-388)||(6923530-6923568)
chr1 (340-388)||(51387129-51387177)
chr1 (336-385)||(40978754-40978803)
[»] chr5 (5 HSPs)
chr5 (338-396)||(4082578-4082636)
chr5 (341-388)||(40951477-40951524)
chr5 (338-388)||(16349715-16349765)
chr5 (351-391)||(25099233-25099273)
chr5 (351-391)||(25158323-25158363)
[»] chr4 (7 HSPs)
chr4 (351-390)||(19745250-19745289)
chr4 (351-390)||(19794517-19794556)
chr4 (351-389)||(9199865-9199903)
chr4 (351-389)||(9201404-9201442)
chr4 (350-388)||(17558825-17558863)
chr4 (327-388)||(32225583-32225644)
chr4 (350-390)||(23976704-23976744)
[»] chr3 (3 HSPs)
chr3 (350-389)||(44708226-44708265)
chr3 (351-388)||(5561553-5561590)
chr3 (350-391)||(53693220-53693261)
[»] chr7 (2 HSPs)
chr7 (351-397)||(7853691-7853737)
chr7 (346-388)||(9031590-9031632)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 388 - 579
Target Start/End: Complemental strand, 22422628 - 22422438
Alignment:
Q  388 taattcttatatcaaattaactatatgaatacaacttgatcaattttaaaaaatctttagtaacactcctatctagaggataggcatatctaaatgtgtt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22422628 taattcttatatcaaattaactatatgaatacaacttgatcaattttaaaaaatctttagtaacactcctatctagaggataggcatatctaaatgtg-t 22422530  T
Q  488 tcttcactttttctgctttttccttttatttgtgaacactattcttccttctaactctctactttatttctctcttccattgatgttcataa 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22422529 tcttcactttttctgctttttccttttatttgtgaacactattcttccttctaactctctactttatttctctcttccattgatgttcataa 22422438  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 389
Target Start/End: Original strand, 19970458 - 19970497
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagta 389  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19970458 atatatgacccgtgctgccgcacgggtagacgatctagta 19970497  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 21022351 - 21022312
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagta 389  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21022351 atatatgacccgtgctgccgcacgggtagacgatctagta 21022312  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 16367878 - 16367916
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  16367878 atatatgacccgtgcggcagcacgggtagacgatctagt 16367916  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 26960209 - 26960258
Alignment:
Q  340 gtttttaaaaatatatgacccgtgctgccgcacgggtagacgatctagta 389  Q
    ||||||||  ||||||||||||||| || |||||| ||||||||||||||    
T  26960209 gtttttaactatatatgacccgtgcggcagcacggatagacgatctagta 26960258  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 38236348 - 38236310
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38236348 atatatgacccgtgctgccgcacgggtagacgatctagt 38236310  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 6923530 - 6923568
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  6923530 atatatgacccgtgctgctgcacgggtagacgatctagt 6923568  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 51387177 - 51387129
Alignment:
Q  340 gtttttaaaaatatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    ||||||||  ||||||||||||||| || ||||||||||||||||||||    
T  51387177 gtttttaactatatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 40978803 - 40978754
Alignment:
Q  336 ttatgtttttaaaaatatatgacccgtgctgccgcacgggtagacgatct 385  Q
    ||||||||||||   |||||||||||||| || |||||||||||||||||    
T  40978803 ttatgtttttaatcgtatatgacccgtgcggcagcacgggtagacgatct 40978754  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 4082578 - 4082636
Alignment:
Q  338 atgtttttaaaaatatatgacccgtgctgccgcacgggtagacgatctagtaattctta 396  Q
    ||||||||||  ||||||||||||||| || |||||||| ||||||||||| |||||||    
T  4082578 atgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagtgattctta 4082636  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 40951477 - 40951524
Alignment:
Q  341 tttttaaaaatatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    |||||||  ||||||||||||||| || ||||||||||||||||||||    
T  40951477 tttttaactatatatgacccgtgcggcagcacgggtagacgatctagt 40951524  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 16349765 - 16349715
Alignment:
Q  338 atgtttttaaaaatatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    ||||||||||  ||||||||||||||| || |||||||| |||||||||||    
T  16349765 atgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 16349715  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 25099273 - 25099233
Alignment:
Q  351 tatatgacccgtgctgccgcacgggtagacgatctagtaat 391  Q
    |||||||||||||| || |||||||| ||||||||||||||    
T  25099273 tatatgacccgtgcggcagcacgggtggacgatctagtaat 25099233  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 25158363 - 25158323
Alignment:
Q  351 tatatgacccgtgctgccgcacgggtagacgatctagtaat 391  Q
    |||||||||||||| || |||||||| ||||||||||||||    
T  25158363 tatatgacccgtgcggcagcacgggtggacgatctagtaat 25158323  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 19745250 - 19745289
Alignment:
Q  351 tatatgacccgtgctgccgcacgggtagacgatctagtaa 390  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  19745250 tatatgacccgtgcggccgcacgggtggacgatctagtaa 19745289  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 19794556 - 19794517
Alignment:
Q  351 tatatgacccgtgctgccgcacgggtagacgatctagtaa 390  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  19794556 tatatgacccgtgcggccgcacgggtggacgatctagtaa 19794517  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 389
Target Start/End: Complemental strand, 9199903 - 9199865
Alignment:
Q  351 tatatgacccgtgctgccgcacgggtagacgatctagta 389  Q
    |||||||||||||| || |||||||||||||||||||||    
T  9199903 tatatgacccgtgcggcagcacgggtagacgatctagta 9199865  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 389
Target Start/End: Complemental strand, 9201442 - 9201404
Alignment:
Q  351 tatatgacccgtgctgccgcacgggtagacgatctagta 389  Q
    |||||||||||||| || |||||||||||||||||||||    
T  9201442 tatatgacccgtgcggcagcacgggtagacgatctagta 9201404  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 17558863 - 17558825
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  17558863 atatatgacccgtgcggcagcacgggtagacgatctagt 17558825  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 32225644 - 32225583
Alignment:
Q  327 atcattgaattatgtttttaaaaatatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    |||||||  ||||||||||||  ||||||||||||||| || |||| ||| |||||||||||    
T  32225644 atcattgcgttatgtttttaactatatatgacccgtgcggcagcaccggtggacgatctagt 32225583  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 23976744 - 23976704
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagtaa 390  Q
    ||||||||||||||| || |||||||| |||||||||||||    
T  23976744 atatatgacccgtgcggcagcacgggtggacgatctagtaa 23976704  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 44708265 - 44708226
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagta 389  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  44708265 atatatgacccgtgcggcagcacgggtagacgatctagta 44708226  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 5561590 - 5561553
Alignment:
Q  351 tatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    |||||||||||||| || ||||||||||||||||||||    
T  5561590 tatatgacccgtgcggcagcacgggtagacgatctagt 5561553  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 53693220 - 53693261
Alignment:
Q  350 atatatgacccgtgctgccgcacgggtagacgatctagtaat 391  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  53693220 atatatgacctgtgcggcagcacgggtagacgatctagtaat 53693261  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 397
Target Start/End: Original strand, 7853691 - 7853737
Alignment:
Q  351 tatatgacccgtgctgccgcacgggtagacgatctagtaattcttat 397  Q
    |||||||||||||| |  |||||||||||||||||||||||| ||||    
T  7853691 tatatgacccgtgcggtagcacgggtagacgatctagtaattgttat 7853737  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 9031590 - 9031632
Alignment:
Q  346 aaaaatatatgacccgtgctgccgcacgggtagacgatctagt 388  Q
    |||| |||||||||||||| || ||||||||||||||||||||    
T  9031590 aaaattatatgacccgtgcggctgcacgggtagacgatctagt 9031632  T

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