View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_6 (Length: 455)
Name: NF14061_low_6
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 32834242 - 32833821
Alignment:
| Q |
17 |
tgaagaataggcaggcaagtcgaggtgtaagacagagagaaacagataggtggagccatccatgtttgtttgaataataagtggatgacctgacttgatc |
116 |
Q |
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| T |
32834242 |
tgaagaataggcaggcaagtcgaggtgtaagacagagagaaacagataggtggagccatccatgtttgtttgaataataagtggatgacctgacttgatc |
32834143 |
T |
|
| Q |
117 |
ctttctttctgtttccgaatccaaacgtgtgcaactcacacccccaccccacnnnnnnnnatatataataaaaccaatcaaccactcttcattcatcttc |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32834142 |
ctttctttctgtttccgaatccaaacgtgtgcatctcacacccccaccccacttttttatatatataataaaaccaatcaaccactcttcattcatcttc |
32834043 |
T |
|
| Q |
217 |
ttcatttctttcaactttaaccaaatcatctctctcttttatatatatggcagatccaaacagaaacaccaccaccacc---cttcaaaaaccaagccgt |
313 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32834042 |
tttatttctttcaactttaacctaatcatctctctcttttatatat--ggcagatccaaacagaaacaccaccaccaccacccttcaaaaaccaagccgt |
32833945 |
T |
|
| Q |
314 |
ttacaaaaacgagctccatcttccttacaaattaaccgctccatccaatggaacgtcgccatccctctcctatctcccttatcatcatctccaccacctc |
413 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
32833944 |
ttacaaaaacgtgctccatcttccttacaaatcaaccgctccatccaatggaacgtcgccatccctctcttatctcccttatcatcttctccaccacctc |
32833845 |
T |
|
| Q |
414 |
aactgccggatacaagaccgtctc |
437 |
Q |
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|||||||||||||||||||||||| |
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| T |
32833844 |
aactgccggatacaagaccgtctc |
32833821 |
T |
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