View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14061_low_9 (Length: 443)
Name: NF14061_low_9
Description: NF14061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14061_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 135 - 442
Target Start/End: Complemental strand, 38917013 - 38916706
Alignment:
| Q |
135 |
agggttcattgattctaaatcacgcattgtgttcgttcaagcgcgtgaaatccgaaactatttttgatgttaatcgtttgatttgtgattttttgaagat |
234 |
Q |
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| T |
38917013 |
agggttcattgattctaaatcacgcattgtgttcgttcacgcgcgtgaaatccgaaactatttttgatgttaatcgtttgatttgtgattttttgaagat |
38916914 |
T |
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| Q |
235 |
gaataatatgaagaatatgaaagttccaagtggtggtgctgcttcaacactggcgaaattgggaattattggtggaattggtttgtatgctgctgctaac |
334 |
Q |
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| T |
38916913 |
gaataatatgaagaatatgaaagttccaagtggtggtgctgcttcaacactggcgaaattgggaattattggtggaattggtttgtatgctgctgctaac |
38916814 |
T |
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| Q |
335 |
agtctttacaatgttgaaggaggtcaccgtgctattgtgttcaatcgtctcgttggtgtcaaagacaaggtcattttctagggtttagggttttgattgt |
434 |
Q |
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| T |
38916813 |
agtctttacaatgttgaaggaggtcaccgtgctattgtgttcaatcgtctcgttggtgtcaaagacaaggtcattttctagggtttagggttttgattgt |
38916714 |
T |
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| Q |
435 |
aacctcat |
442 |
Q |
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| T |
38916713 |
aacttcat |
38916706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 38917133 - 38917075
Alignment:
| Q |
15 |
aggtacaacaatccatttcttcaattttctctctcgagaatcttccaccttagaaatca |
73 |
Q |
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| T |
38917133 |
aggtacaacaatccatttcttcaattttctctctcgagaatcttccaccttagaaatca |
38917075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 409
Target Start/End: Complemental strand, 27779137 - 27778974
Alignment:
| Q |
245 |
aagaatatgaaagttccaagtggtggtgctgcttcaacactggcgaaattgggaattattggtggaattggtttgtatgctgctgctaacagtctttaca |
344 |
Q |
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| T |
27779137 |
aagaacatgaaagttccaagcggtagtgctgcctctctactgacgaaattgtggattattggttggattggtttctatggtgctgttaacagtctttacg |
27779038 |
T |
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| Q |
345 |
atgttgaaggaggtcaccgtgctattgtgttcaatcgtctcgttggtgtcaaagacaaggtcatt |
409 |
Q |
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| T |
27779037 |
atg-tgaaggagtacaccgggctattgttttcaaccaccttgttggtttcaaagacaaggtcatt |
27778974 |
T |
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