View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14062_high_1 (Length: 541)
Name: NF14062_high_1
Description: NF14062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14062_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Complemental strand, 8840256 - 8839770
Alignment:
| Q |
14 |
gcagagacctctaaaaacgtcataataatcgcattgcagagaaaaatatgacgattgctaattaatttttacattttaagctttcatttccctatgcata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8840256 |
gcagagacctctaaaaacgtcataataatcgcattgcggagaaaaatatgacgattgctaattagtttttacattttaagctttcatttcactatgcata |
8840157 |
T |
|
| Q |
114 |
tttctctatgaaatctacttgcttacaacatggctttcatgacttgtatggttgtctataggtggagtaggaatatcacgtatgattcagaggattcaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8840156 |
tttctctatgaaatctacttgcttacaacatggctttc---acttgtatggttgtctataggtggagtaggaatatcacgcatgattcagaggattcaga |
8840060 |
T |
|
| Q |
214 |
ggaatgaatacatgggatttgaggagttttgttactagtgtatgatgaatttaatcttgtttatgatgaattttttctacaagtatatatttgatgcata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
8840059 |
ataatgaatacatgggatttgaggagttttgctactagtatatgatgaa---------------------ttttttctacaagtatatatatgatgcata |
8839981 |
T |
|
| Q |
314 |
tagaggttcatgtatttatctaagttttggcgttattattgtttgccttctccacacacgaagaatcatatatgttgttttactcaatatacaatgattg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8839980 |
gagaggttcatgtatttatctaagttttggcgttattattgtttgccttctccacacacgaagagtcagatatgttgttttactcaatatacaatgattg |
8839881 |
T |
|
| Q |
414 |
aggaattttttattatttgaagctatactataaatgattgaatgttatatgttctgttctgtcatactcataacatgcagagaaagagatgacttatttt |
513 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
8839880 |
gggaattttttattacttgaagctatactataaatgattacatgttatatgttctgttctgtcatactcataccatgcagag-aagagatgacttatttt |
8839782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University