View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14062_high_4 (Length: 367)
Name: NF14062_high_4
Description: NF14062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14062_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 6270916 - 6270566
Alignment:
| Q |
16 |
aaaaactagattatcaaatgtaacaatgaatagattatcacttacttctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6270916 |
aaaaactagattatcaaatgtaacaatgaatagattatcacttacctctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatcc |
6270817 |
T |
|
| Q |
116 |
accaatcccagaaattccaacaagacaaaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6270816 |
accaatcccagaaattccaacaagacaaaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaa |
6270717 |
T |
|
| Q |
216 |
ttccccaaactaccctcatcttcctcactagacctcacagcttcctcaacccacccaacaccaccaacgccaatcttcatccctccaaaaaaccgctcca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6270716 |
ttccccaaactaccctcatcttcctcactagacctcacagctccctcaacccacccaacaccaccaacgccaatcttcatccctccaaaaaaccgctcca |
6270617 |
T |
|
| Q |
316 |
tcctccggttcgactcctcaatccggtcaaaccgctccgtcatctctgctc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6270616 |
tcctccggttcgactcctcaatccggtcaaaccgctccgtcatctcggctc |
6270566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 6261877 - 6261687
Alignment:
| Q |
43 |
gaatagattatcacttacttctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagaca |
142 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||| ||| ||||||| || |
|
|
| T |
6261877 |
gaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaaccca |
6261778 |
T |
|
| Q |
143 |
aaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctca |
233 |
Q |
| |
|
||||| | ||||| | |||||| ||| |||| || |||||||| || |||||||||| ||||||| ||||||||| || |||||||| |
|
|
| T |
6261777 |
taaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataattaccctca |
6261687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 6261660 - 6261600
Alignment:
| Q |
245 |
agacctcacagcttcctcaacccacccaacaccaccaacgccaatcttcatccctccaaaa |
305 |
Q |
| |
|
||||||||||||||||| |||||||| |||| || ||||||||||||||| | |||||| |
|
|
| T |
6261660 |
agacctcacagcttcctgcacccaccctccacctcccacgccaatcttcatctcaccaaaa |
6261600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University