View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14062_high_5 (Length: 316)
Name: NF14062_high_5
Description: NF14062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14062_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 42658436 - 42658628
Alignment:
| Q |
16 |
attattgcatcagatacacatgaatcctccaacattacaaccactttcaaagagaaagaattcaaagttttatcaaatttaattgctcttaaatcacctt |
115 |
Q |
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| T |
42658436 |
attattgcatcacatacacatgaatcctccaacattacaaccactttcaaagagaaagaattcaaagttttatcaaatttaattgctcttaaatcacctt |
42658535 |
T |
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| Q |
116 |
gcaaccttctcatatttggttttcaaccacaattccttatcctctcatcaatgaatgaagcaggcaacaccatctttctcgacgataaccacg |
208 |
Q |
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| T |
42658536 |
gcaaccttctcatatttggttttcaaccacaattccttatcctctcatcaatgaatgaagcaggcaacaccatctttctcgacgataaccacg |
42658628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 42658692 - 42658730
Alignment:
| Q |
272 |
ataatgtaccaacaaaagaagcttataaactactcaaac |
310 |
Q |
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| T |
42658692 |
ataatgtaccaacaaaagaagcttataaactactcaaac |
42658730 |
T |
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