View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14062_low_5 (Length: 399)
Name: NF14062_low_5
Description: NF14062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14062_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 35816735 - 35817105
Alignment:
| Q |
1 |
tttacaggattagtcggtctttatctatctgtgtttggagtagcttattttgcaacgagaaaacttgnnnnnnnnn-gtcagctttcaaagggttgtatt |
99 |
Q |
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| T |
35816735 |
tttacaggattagtcggtctttatctatctgtgttttgagtagcttattttgcaacgagaaaacttgttttttttttgtcagctttcgaagggttgtatt |
35816834 |
T |
|
| Q |
100 |
ttgaaaattaactgcccaagaaaagagctttcagccaaatgaatgtggttataagctcagtaggttacaagcaacatggcaaattttcccttattatttg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35816835 |
ttgaaaattaactgcccaagaaaagagctttcagccaaatgaatgtggttataagc----------------aacatggcaaattttcccttattatttg |
35816918 |
T |
|
| Q |
200 |
taagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcatttccttgtgggaaagaggacgtaatgatgaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35816919 |
taagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcatttccttgtgggaaagaggacgtaatgatgaaa |
35817018 |
T |
|
| Q |
300 |
cccaattcacccagctgttgcaacgccaacatgcacaaggtcaaattcattaaatataatgtgaaccaatgccaagtagttgagatt |
386 |
Q |
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| T |
35817019 |
cccaattcacccagctgttgcaacgccaacatgcacaaggtcaaattcattaaatataatgtgaaccaatgccaagtagttgagatt |
35817105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 36744489 - 36744566
Alignment:
| Q |
190 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcat |
267 |
Q |
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||||||||||||||||||||||||||||||| | |||||| |||||||||||||| | ||| |||||||||||| |
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|
| T |
36744489 |
ttattatttgtaagtgttacatgctgccacaatggattcttaagtttcttgtcaaacttctctcgtaacaataagcat |
36744566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 15533559 - 15533638
Alignment:
| Q |
190 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcattt |
269 |
Q |
| |
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|||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| | |||| |||||||| ||||| |
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| T |
15533559 |
ttataatttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaacttctctcataacaataaccattt |
15533638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 15517053 - 15517127
Alignment:
| Q |
195 |
atttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcattt |
269 |
Q |
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| T |
15517053 |
atttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaatttctctcataacaataagcattt |
15517127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 23693169 - 23693118
Alignment:
| Q |
190 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgt |
241 |
Q |
| |
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|||||||||| ||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
23693169 |
ttattatttgaaagagttacatggtgccacataggattcttgcgtttcttgt |
23693118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 8459064 - 8459014
Alignment:
| Q |
195 |
atttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaa |
245 |
Q |
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|||||| ||||||||||||| |||||||||||| ||| ||||||| ||||| |
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| T |
8459064 |
atttgtgagtgttacatgctaccacatagaatttttgtgtttcttatcaaa |
8459014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 8003947 - 8003907
Alignment:
| Q |
190 |
ttattatttgtaagtgttacatgctgccacatagaattctt |
230 |
Q |
| |
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|||||||||| ||| |||||||| ||||||||||||||||| |
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| T |
8003947 |
ttattatttgaaagagttacatgttgccacatagaattctt |
8003907 |
T |
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