View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14063_high_5 (Length: 655)
Name: NF14063_high_5
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14063_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 209 - 637
Target Start/End: Original strand, 31828639 - 31829065
Alignment:
| Q |
209 |
acaaaaacatagacatgaactcgggttcaaatccggccaaaccagttttgtccaaaaatgactagaattagtccaccatcgaagacggtggtcggtgaac |
308 |
Q |
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| T |
31828639 |
acaaaaacatagatatgaactcgggttcgaatccggccaaatcagttttgtccaaaaatgactagaattaatccaccatcgaagacggtggtcggtgaac |
31828738 |
T |
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| Q |
309 |
ccgaatcgctccaactagatacaatttatatattttttgtctcaaatatttgtgacaaattcaaatttttattttctagtatatgtgtggatgtgctaac |
408 |
Q |
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| T |
31828739 |
ctgaatcgcttcaactagatacaatttatatatttt--gtctggaatttttttgaccaattcaaatttttattttctagtatatgtgtggatgtgctaac |
31828836 |
T |
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| Q |
409 |
cgtttgtttggtatttttgccgtggaaaccgatttgcaggccggaactaaccacaaatatgaggtaaagcatttagaactactaaaccataaagtttgca |
508 |
Q |
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| T |
31828837 |
cgtttgtttggtatttttgtagtggaaaccgatttgcaggccggagctaaccacaaatatgaggtaaagcatttagaactactaaaccataaagtttgca |
31828936 |
T |
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| Q |
509 |
catcaaaaactatttaagtaaactaaactacaatgtttctgatgtattcaattgcaaagatcattctaattggattaatatttgcggtgataatccagtc |
608 |
Q |
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| T |
31828937 |
catcaaaaactatttaagtaaactaaactacaatgtttctgatgtattcaattgcagggatcatatttattggactcatatttgcgctcataatccaatc |
31829036 |
T |
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| Q |
609 |
ctaggctgcaaaagagtatgcaccggtaa |
637 |
Q |
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| T |
31829037 |
atatgttgcaaaagagtatgcaccggtaa |
31829065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 31828415 - 31828602
Alignment:
| Q |
23 |
gcaggatcctcaattatgcttggcatagctttgacatctatattaatatctgatccctatggtaccctcaacacattgtttggtcttagcacaaatttat |
122 |
Q |
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| T |
31828415 |
gcaggatcctcaattatgcttggcatagctttgacatctatactaatatctgatccccatggtaccctcaacacattgtttggtcttagcacaaatttat |
31828514 |
T |
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| Q |
123 |
ggatggcaaatgctagagcaggtgtgttgtgattatatatagaacaaaagctannnnnnnggatttaatgggatttgatttttgacaca |
211 |
Q |
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| T |
31828515 |
ggatggcaaatgctagaggaggtgtgttttgattatatatagaacaaaagcta-ttttttggatttaatgggatttgatttttgacaca |
31828602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 31824763 - 31824799
Alignment:
| Q |
92 |
aacacattgtttggtcttagcacaaatttatggatgg |
128 |
Q |
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| T |
31824763 |
aacacgttgtttggtcttagcacaaatctatggatgg |
31824799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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