View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14063_high_8 (Length: 433)
Name: NF14063_high_8
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14063_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 417
Target Start/End: Complemental strand, 50407064 - 50406657
Alignment:
| Q |
10 |
aaatgaatagcagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattct |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50407064 |
aaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattct |
50406965 |
T |
|
| Q |
110 |
taacacaagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnn |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50406964 |
taacacaagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtatttt |
50406865 |
T |
|
| Q |
210 |
nnnagtcactgctaaccatatcataaagtaaccaaagaagttaagaagggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagcca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50406864 |
tttagtcactgctaaccatatcataaagtaaccaaagaagttaagaagggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagcca |
50406765 |
T |
|
| Q |
310 |
gagaaaacaccaaggttgccacctaagtctttgaagaaactaaggaggttaagagttgtttggtcataggctaaggatgtttttatggtactagagtaaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50406764 |
gagaaaacaccaaggttgccacctaagtctttgaagaaactaaggaggttaagagttgtttggtcataggctaaggatgtttttatggtactagagtaaa |
50406665 |
T |
|
| Q |
410 |
gaccaaac |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
50406664 |
gaccaaac |
50406657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 50390172 - 50389996
Alignment:
| Q |
15 |
aatagcagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaaca |
114 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||||| ||| | || |||| ||||||||||||||||||| |
|
|
| T |
50390172 |
aatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaaca |
50390073 |
T |
|
| Q |
115 |
caagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaac |
191 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50390072 |
caagtaacaagtgaaccggtgtttgcaaaagactgagaattagcacctatgcaaatgtaaagacacatttgccaaac |
50389996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 50393446 - 50393210
Alignment:
| Q |
15 |
aatagcagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaaca |
114 |
Q |
| |
|
||||||||| ||||| |||||||| || |||||||||||||||||||||||||| | ||| ||||| || | || |||| ||| ||||||||||||||| |
|
|
| T |
50393446 |
aatagcagagtaaagctgtgtgattattgcaccactaagaccaacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaaca |
50393347 |
T |
|
| Q |
115 |
caagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnnnnnag |
214 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || | |
|
|
| T |
50393346 |
caagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaacttttggtcttgctatttttttgg |
50393247 |
T |
|
| Q |
215 |
tcactgctaaccatatcataaagtaaccaaagaagtt |
251 |
Q |
| |
|
| |||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
50393246 |
tgactgataaccaaatcataaagtaaccaaaaaagtt |
50393210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 50385027 - 50384664
Alignment:
| Q |
15 |
aatagcagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaaca |
114 |
Q |
| |
|
||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||| | ||| ||||| || | || |||| ||| ||||||||||||||| |
|
|
| T |
50385027 |
aatagcagagtaaagctgtgtgatgattgcaccactgagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaaca |
50384928 |
T |
|
| Q |
115 |
caagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnnnnnag |
214 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || | |
|
|
| T |
50384927 |
caagtcacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaacttgtggtcttgctatttttttgg |
50384828 |
T |
|
| Q |
215 |
tcactgctaaccatatcataaagtaaccaaagaagttaagaagggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagccagagaa |
314 |
Q |
| |
|
| |||| |||||| ||||| |||||||||||||| || |||| | ||| |||| | ||| || ||||||| || ||| ||||||| || || | |
|
|
| T |
50384827 |
taactgataaccaaatcatgaagtaaccaaagaaattgagaatagcacctattgtcaaaactacccaaggtggatagagttcgttgattagtcctgaaag |
50384728 |
T |
|
| Q |
315 |
aacaccaaggttgccacctaagtctttgaagaaactaaggaggttaagagttgtttggtcatag |
378 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| |||||||||||||| || || ||||||||||| |
|
|
| T |
50384727 |
gacaccaacgttgctaccaaagtctttgaaaaaactaaggaggttcagtgtactttggtcatag |
50384664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 392
Target Start/End: Complemental strand, 41334118 - 41333750
Alignment:
| Q |
24 |
ataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaaca |
123 |
Q |
| |
|
||||| |||||| |||||||||||||| | |||||||||||||||||||| || || ||| ||||||| | | ||||||||||||||||||||||| |
|
|
| T |
41334118 |
ataaatttgtgtaataatagcaccacttaaaccaacataaccttttaaaagacctaaaacactaccacgactattagggaaattcttaacacaagtaact |
41334019 |
T |
|
| Q |
124 |
agtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnnnnnagtcactgcta |
223 |
Q |
| |
|
| | ||| ||||| | ||||| |||||||| ||||| || ||||| ||||||||||||||||||||||| ||| | | | ||| || | | |
|
|
| T |
41334018 |
aaagcacctgtgttagtaaaagtttgagaatttgcaccaatgcaaatataaagacacatttgccaaactttaggtgtatgaatttttttagtaacggaaa |
41333919 |
T |
|
| Q |
224 |
accatatcataaagtaaccaaagaagttaagaagggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagccagagaaaacaccaag |
323 |
Q |
| |
|
||||||||| |||||||||||||| || | | || ||| || |||||||| ||||||||||||||||||||||||| || |||| || |||| |
|
|
| T |
41333918 |
gccatatcatgaagtaaccaaagaaattcatgatggtaccggttaagagaacaacccaaggtggtgtgatttcattgattaaaccggagatgacgccaac |
41333819 |
T |
|
| Q |
324 |
gttgccacctaagtctttgaagaaactaaggaggttaagagttgtttggtcataggctaaggatgtttt |
392 |
Q |
| |
|
|||| |||| | |||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||| |
|
|
| T |
41333818 |
gttggcaccgaggtctttgaagaaactaaggaggtttagagttgtttggtcataggataaagaggtttt |
41333750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 24223965 - 24223916
Alignment:
| Q |
15 |
aatagcagaataaagttgtgtgataatagcaccactaagaccaacataac |
64 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
24223965 |
aatagcagagtaaagttgtgtgatgattgcaccactaagaccaacataac |
24223916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University