View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14063_low_1 (Length: 1010)
Name: NF14063_low_1
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14063_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 44547473 - 44546958
Alignment:
| Q |
18 |
ggattgacttcattatcctaccaaaaaagttcatccttcaattaagaagcaacacaaacggccaacaaaaacaaaatcgagcagaaaagtaccaatttgg |
117 |
Q |
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| T |
44547473 |
ggattgacttcattatcctaccaaaaaagttcatccttcaattaggaagcaacacagacggccaacaaaaacaaaatcgaccagaaaagtaccaatttgg |
44547374 |
T |
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| Q |
118 |
atcgcatgcactcgacgtttgataaaagttggacattctagatttcaatctcaatattttagggtttagattaaaacagtgaaaaataaacttatagcat |
217 |
Q |
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| T |
44547373 |
atcgcatgcactcgacgtttgataaaagttggacattctagatttcaatctcaatattttagggtttagattaaaacagtgaaaaataaacttatagcat |
44547274 |
T |
|
| Q |
218 |
cttgattcaacgcctgccaatgttccaactgcgtgcatatgacttgagtgcatacaaatccaaccaaataagtacaaaagcaaattgcctcgacag-ccc |
316 |
Q |
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| T |
44547273 |
cttgattcaacgcctgccaatgttccaactgcgtgcatatgacttgagtgcatacaaatccaaccaaataagtacaaaagcaaattgccttgacagcccc |
44547174 |
T |
|
| Q |
317 |
ccgacattcacacaatcggtgcatcgctaactgttagatgggatcaagatctgaaccatttggtctcgatccaacggttaccgatgggctgactggaagc |
416 |
Q |
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| T |
44547173 |
ccgaca-tcacacaatcagtgcatcgctaactgttagatgggatcaagatctgaaccatttggtctcgatccaacggttaccgatgggctgactggaagc |
44547075 |
T |
|
| Q |
417 |
aatggcattcgaatagatagtacatacacatcataaaagaaagataaaatgtggactattagnnnnnnnnnnnnttgacaaatataagattgcatattac |
516 |
Q |
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| T |
44547074 |
aatgacattcga----atagtacatacacatcataaaagaaagataaaatgtggactattagaaaaaagaaaaattgacaaatttaagattgcatattac |
44546979 |
T |
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| Q |
517 |
caagctttccacattaattat |
537 |
Q |
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| T |
44546978 |
caagctttccacattaattat |
44546958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 602 - 1002
Target Start/End: Complemental strand, 44546893 - 44546493
Alignment:
| Q |
602 |
acaaatgtagctttcacagctgaaacaccttcttcctcattcacatcgttcttttctggaatctttatcggacgtcctcttttccttttaccagcatttt |
701 |
Q |
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| T |
44546893 |
acaaatgtagctttcacagctgaaacaccttcttcctcattcacatcgttcttttctggaatctttatcggacgtcctcttttccttttaccagcatttt |
44546794 |
T |
|
| Q |
702 |
tatttccttttgaagccacatcacttttcttattgttaatcccacgtttcctagcagcagagccagagagttttgttgcacctttcaatttcctacccct |
801 |
Q |
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| T |
44546793 |
tatttccttttgaagccacatcacttttcttattgttaatcccacgtttcctagcagcagagccagagagttttgttgcacctttcaatttcctacccct |
44546694 |
T |
|
| Q |
802 |
accacccttctttgaaaccacacgatttgtttgaacattacgtctctttccaccaagtttaccctttttctttgttgcacatgatgattcatnnnnnnna |
901 |
Q |
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| T |
44546693 |
accacccttctttgaaaccacacgatttgtttgaacattacgtctctttccaccaagtttatcctttttctttgttgcacatgatgattcatccccccca |
44546594 |
T |
|
| Q |
902 |
tattttacatacacatcatcctcaactatctcaagtacattagattttccatgacgcttcatatgcttcattaaaaacctatggcgttcattttcttctt |
1001 |
Q |
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| T |
44546593 |
tattttacatacacatcatcctcaactatctcaagtacattagattttccatgacgcttcatatgcttcaataaaaacctatgtcgttcattttcttctt |
44546494 |
T |
|
| Q |
1002 |
c |
1002 |
Q |
| |
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| T |
44546493 |
c |
44546493 |
T |
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